View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_32 (Length: 311)
Name: NF19104_low_32
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 42835471 - 42835767
Alignment:
| Q |
4 |
tggcgctataatcttgttgtagaatatttgaatttgaacaaacctatattttctgcgatttgcaattgacaagattaacaagttactaatattt------ |
97 |
Q |
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| T |
42835471 |
tggcgctataatcttgttgtagaatatttgaatttgaacaaacctatattttctgcgatttgcaattgacaagattaacaagttactactatttatatat |
42835570 |
T |
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| Q |
98 |
gtatatgtatatgtatgttttcttcctgtgatttatggtggataggaggcttctaaccaaattattttatacattgttagattatgtttttcatctcaaa |
197 |
Q |
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| T |
42835571 |
gtatatgtatatgtatgttttcttcctgtgatttatggtggatgggaggcttctaaccaaattattttatacattattagattatgtttttcatctcaaa |
42835670 |
T |
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| Q |
198 |
acttgatgtcatcaagagttcaaattctgatacctacattatgtttgaggaagcnnnnnnngaggacttgatgaactc---tcagttgcaaacgcaa |
291 |
Q |
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| T |
42835671 |
acttgatgtcatcaagagttcaaattctgatacctacattatgtttgaggaagcaaaaaaagaggacttgatgaactctcatcagttgcaaacgcaa |
42835767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 42502782 - 42502873
Alignment:
| Q |
142 |
ggaggcttctaaccaaattattttatacattgttagattatgtttttcatctcaaaacttgatgtcatcaagagttcaaattctgataccta |
233 |
Q |
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| T |
42502782 |
ggaggcatctaacttaattactttataccttgttaggttatgtttttcatctcgaaacctgatgtcttcaagagtcctaattcagagaccta |
42502873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 48605241 - 48605199
Alignment:
| Q |
33 |
gaatttgaacaaacctatattttctgcgatttgcaattgacaa |
75 |
Q |
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| T |
48605241 |
gaatttgaacaaacctctgttttctgcgatttgcaattgacaa |
48605199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 42499520 - 42499587
Alignment:
| Q |
184 |
tttttcatctcaaaacttgatgtcatcaagagttcaaattctgatacctacattatgtttgaggaagc |
251 |
Q |
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| T |
42499520 |
tttttcatctcaaaacctgatgtgttcaagagcccaaattctgagacctacataatatttggggaagc |
42499587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 18899962 - 18899920
Alignment:
| Q |
33 |
gaatttgaacaaacctatattttctgcgatttgcaattgacaa |
75 |
Q |
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| T |
18899962 |
gaatttgaacaaactactattttctgcgatttgcaattgacaa |
18899920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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