View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_38 (Length: 291)
Name: NF19104_low_38
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 1495454 - 1495694
Alignment:
| Q |
7 |
gtgagaagaaagcatgaacacaattagatcaacaatgccatgcaacaaataggatgactcagtgcacaaggctcccaccaagtggagtttggagaaataa |
106 |
Q |
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| T |
1495454 |
gtgataagaaagcatgaacacaattagatcaacaatgcgatgcaacaaataggacgactcagtgcacaaggctcccaccaagtggagtttggagaaataa |
1495553 |
T |
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| Q |
107 |
gatgtatgcggccttatccctacaaagcagataggcttccgatatttgaaaacatgtgaccttcatgtcacgaaacaaggcaacaaccttaccgttgtgc |
206 |
Q |
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| T |
1495554 |
gatgtatgcggccttatccctacaaagcagataggcttccgatatttgaaaacatgtgaccttcaagtcacgaaacaaggcaacaaccttaccgttgtgc |
1495653 |
T |
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| Q |
207 |
caaagcacttccacatcaacaactcaacacaatgataaacg |
247 |
Q |
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| T |
1495654 |
caaagcacttccacatcaacaactcaacacaatgataaacg |
1495694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1490594 - 1490630
Alignment:
| Q |
7 |
gtgagaagaaagcatgaacacaattagatcaacaatg |
43 |
Q |
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| T |
1490594 |
gtgataagaaagcatgaacacaattagatcaacaatg |
1490630 |
T |
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