View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_39 (Length: 291)
Name: NF19104_low_39
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 2774451 - 2774192
Alignment:
| Q |
14 |
tactaatgaagagcaacttggaggatgtcataactgccattgatctttcaagaaaaactttatttcgtatacgcctcaattatgtttgggctttgggtta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2774451 |
tactaatgaagagcaacttggaggatgtcataactgccattgatctttcaagaaaaactttatttcgtatacgcctcaattatgtttgggctttgggtta |
2774352 |
T |
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| Q |
114 |
taatttgcttggcattccaatagcagctggagttcttttcccttctacaggctttcggttgccgccttggatcgctggagctgctatggctgcctcttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2774351 |
taatttgcttggcattccaatagcagctggagttcttttcccttctacaggctttcggttgccgccttggatcgctggagctgctatggctgcctcttct |
2774252 |
T |
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| Q |
214 |
gtcagtgtagtttgctgttctctgctgttgaaatattacaagagacccaagaagctaaac |
273 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2774251 |
gtcagtgtagtttgttgttctctgctgttgaaatattacaagagacccaagaagctaaac |
2774192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 33903424 - 33903650
Alignment:
| Q |
19 |
atgaagagcaacttggaggatgtcataactgccattgatctttcaagaaaaactttatttcgtatacgcctcaattatgtttgggctttgggttataatt |
118 |
Q |
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|||||||| ||||| |||||| | |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||| |||||||||| ||||||||| |
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| T |
33903424 |
atgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataata |
33903523 |
T |
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| Q |
119 |
tgcttggcattccaatagcagctggagttcttttcccttctacaggctttcggttgccgccttggatcgctggagctgctatggctgcctcttctgtcag |
218 |
Q |
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| || | |||||| || || ||||| | ||||| |||||||| ||| |||| || |||||||| ||||||||||| |||||||| |||||| |||| |
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| T |
33903524 |
ttctagccattcctattgctgctggcatactttttccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcag |
33903623 |
T |
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| Q |
219 |
tgtagtttgctgttctctgctgttgaa |
245 |
Q |
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||| ||||||| |||||| ||||||| |
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| T |
33903624 |
tgttgtttgctcttctctcttgttgaa |
33903650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 33920414 - 33920640
Alignment:
| Q |
19 |
atgaagagcaacttggaggatgtcataactgccattgatctttcaagaaaaactttatttcgtatacgcctcaattatgtttgggctttgggttataatt |
118 |
Q |
| |
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|||||||| ||||| |||||| | |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||| |||||||||| ||||||||| |
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| T |
33920414 |
atgaagagtaacttagaggatataataattgccattgaccttgcaaagaaaactttctcacgtatacgtctaaattatatttgggctttaggttataata |
33920513 |
T |
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| Q |
119 |
tgcttggcattccaatagcagctggagttcttttcccttctacaggctttcggttgccgccttggatcgctggagctgctatggctgcctcttctgtcag |
218 |
Q |
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| || | |||||| || || ||||| | ||||| |||||||| ||| |||| || |||||||| ||||||||||| |||||||| |||||| |||| |
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| T |
33920514 |
ttctagccattcctattgctgctggcatactttttccttctactaaatttaggttaccaccttggattgctggagctgcaatggctgcttcttctatcag |
33920613 |
T |
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| Q |
219 |
tgtagtttgctgttctctgctgttgaa |
245 |
Q |
| |
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||| ||||||| |||||| ||||||| |
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| T |
33920614 |
tgttgtttgctcttctctcttgttgaa |
33920640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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