View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_4 (Length: 602)
Name: NF19104_low_4
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 12151137 - 12151417
Alignment:
| Q |
14 |
tatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattgagggtt |
113 |
Q |
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| T |
12151137 |
tatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattgtgggtt |
12151236 |
T |
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| Q |
114 |
ggaaccagcacctgatattattcataaaacaataatcaaattaaccactagagaacaaaataacaaataagcaaatcaatattacttatgtttgtcagaa |
213 |
Q |
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| T |
12151237 |
agatccagcacctgatattattcataaaccaataatcaaattaaccactagagaacaaaataacaaataagcaaatcaatattacttatttttgtcagaa |
12151336 |
T |
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| Q |
214 |
ttttaccttcttgcacagtactcttgtgctcctgtgcactgtaactaaggatcacataaggatctatgctagctgctcata |
294 |
Q |
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| T |
12151337 |
ttttaccttcttgaacagtactcttgtgctcctgtccactgtaactaaggatcacataaggatctatgctagctgctcata |
12151417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 364 - 589
Target Start/End: Original strand, 12151415 - 12151639
Alignment:
| Q |
364 |
ataaacaaagaaattaacaacgaaaaagttgactaaatgattctctaatacaattagaaaagaaaattatacttgtttaacaagctttatgcataataaa |
463 |
Q |
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| T |
12151415 |
ataagcaaagaaattaacaacgaaaaagttgactaaatgattctctaatacaattagaaaagaaaattatacttatttaacaagctttatgcataataa- |
12151513 |
T |
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| Q |
464 |
tatgtagatcagaccaacttagtatgaataatttctctaataatcaaatcatttttcagatcatgatgaacttttatccaaaaattgaaagtcaaactct |
563 |
Q |
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| T |
12151514 |
tatgtagatcagaccaacttagtatgaataatttctctaataatcaaatcatttttcagatcatgatgaacttttatccaaaaattgaaagtcaaactct |
12151613 |
T |
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| Q |
564 |
tggatccattgtttcatgcagaaatt |
589 |
Q |
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| T |
12151614 |
tggatccattgtttcatgcagaaatt |
12151639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 12143926 - 12144225
Alignment:
| Q |
9 |
aagaatatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattga |
108 |
Q |
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| T |
12143926 |
aagattatcatcagcactatagttgtccttttccattatctttagattgagctcataagcagtgtcagaaacagtgaaaagaaatgtctcattccattga |
12144025 |
T |
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| Q |
109 |
gggttggaaccagcacctgatattattcataaaacaataatcaaattaaccactagaga-----acaaaataacaaataagcaaatcaatatta--ctta |
201 |
Q |
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| T |
12144026 |
gggttggatccagcacctgatattattcataatacaataatca----agcaactagagagaaataaaaattaacaaataagcagattaatactatgttta |
12144121 |
T |
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| Q |
202 |
tgtt---tgtcagaattttaccttcttgcacagtactcttgtgctcctgtgcactgtaactaaggatcacataaggatctatgctagctgctcatacaga |
298 |
Q |
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| T |
12144122 |
tcatcagattcagaaatgtaccttcttgcacagtactcttgtgctcctgtgccctgtaagtgaggatcacataaggatctatgctagctgctcattcaga |
12144221 |
T |
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