View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_40 (Length: 289)
Name: NF19104_low_40
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 41711292 - 41711047
Alignment:
| Q |
9 |
gataatacttttgttttcattgaaaatgatttgtcgataattccattggaatcgaaagactgaaaaatgtctatccaattcaattcacacttgaaaaata |
108 |
Q |
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| T |
41711292 |
gataatacttttgttttcattgaaaatgatttgtcgataattccattggaatcgaaagactgaaaaatgtctatccaattcaattcacacttgaaaaata |
41711193 |
T |
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| Q |
109 |
ttcgaagtgtcatacacgtaaatgtgggacacctctcgtaatccatcggttacacttttaatactacatcttatcttattatattgtaagagacaatttt |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41711192 |
ttcgaagtgtca----cgtaaatgtgggacacctctcgtaatccatcggttacacttttaatactacatcttatcttattatattgtaagagacaatttt |
41711097 |
T |
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| Q |
209 |
gtaaacaaaagttgatgtattttgtttaaaattagaccaaaaacatcggg |
258 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41711096 |
gtaaacaaaagttgatgtattttgtctaaaattagaccaaaaacatcggg |
41711047 |
T |
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