View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_41 (Length: 283)
Name: NF19104_low_41
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 41106624 - 41106827
Alignment:
| Q |
14 |
atgaaacaagaaatagaatcgacctttaaagcatgaatttttcctttggttatttgattctttgcaatacattgtttataacatctttggtaaactcatc |
113 |
Q |
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| T |
41106624 |
atgaaacaagaaatagaatcgacctttaaagcatgaattcttcctttggttatttgattctttgcaatacattgtttataacatctttggtaaactcatc |
41106723 |
T |
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| Q |
114 |
tggattctgccaatcattaacaagtaatggtagaatacgaatgcagaaattccactattgaatcaatgaaacaatacatcggatgatattttcgcaccat |
213 |
Q |
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| T |
41106724 |
tggattctgccaatcattaacaagtaatggtagaatacgaatgcagaaattccactattgaatcaatgaaacaatacatcggatgatattttcgcaccat |
41106823 |
T |
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| Q |
214 |
ccaa |
217 |
Q |
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|||| |
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| T |
41106824 |
ccaa |
41106827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 41106834 - 41106904
Alignment:
| Q |
197 |
tgatattttcgcaccatccaagaaatactttctatttgagaactcctctctcttgcttcacattgcttcct |
267 |
Q |
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| T |
41106834 |
tgatattttcgcaccatccaagaaatactttctatttgagaactcctctctcttgcttcacattgcttcct |
41106904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 35445187 - 35445283
Alignment:
| Q |
35 |
acctttaaagcatgaatttttcctttggttatttgattctttgcaataca-ttgtttataacatctttggtaaactcatctggattctgccaatcat |
130 |
Q |
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| T |
35445187 |
accttcaaagcatcagtttttcctttagtgatttgattctttgcaatacagttgtttataacatctttggtgaattcatctggattcttcccatcat |
35445283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 35704841 - 35704779
Alignment:
| Q |
20 |
caagaaatagaatcgacctttaaagcatgaatttttcctttggttatttgattctttgcaata |
82 |
Q |
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||||||||| |||| ||||||||||||||| |||||| |||||| ||||||||||||| |||| |
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| T |
35704841 |
caagaaataaaatcaacctttaaagcatgagtttttcatttggtgatttgattctttggaata |
35704779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 35704532 - 35704473
Alignment:
| Q |
132 |
aacaagtaatggtagaatacgaatgcagaaattccactattgaatcaatgaaacaataca |
191 |
Q |
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| T |
35704532 |
aacaagtagttgtagaatacaaaagcagaacttccactattgaatcaatgagacagtaca |
35704473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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