View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_42 (Length: 276)
Name: NF19104_low_42
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 14924108 - 14924364
Alignment:
| Q |
12 |
aaaggtagtatgagatctccgagtgatgtaaaaactgttttaatttgctcgaaccgaaccaaaacgaaattgctatagaatcgctcaaataactgaaaca |
111 |
Q |
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| T |
14924108 |
aaaggtagtatgagatctccgagtgatgtaaaaactgttttaatttgctcgaaccgaaccaaaacgaaattgctatagaatcgctcaaataactgaaaca |
14924207 |
T |
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| Q |
112 |
tcgattgtgccggttc-------aaaagttgaattgtccaattctgttcaggatttgaaatattgattctgatatatactctttgaatcagttagggatg |
204 |
Q |
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| T |
14924208 |
tcgatcgtgccggttcacagttcaaaagttgaattgtccgattctgttctggatttgaaatattgattctgatatatactctttgagtcagttagggatg |
14924307 |
T |
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| Q |
205 |
cattttagtataaaacacaattatatgattcttttgtaatataatgtgatatatata |
261 |
Q |
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| T |
14924308 |
cattttagtataaaacataattatatgattcttttgtaatataatgtgatatatata |
14924364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 14924358 - 14924433
Alignment:
| Q |
176 |
atatatactctttgaatcagttagggatgcattttagtataaaacacaattatatgattcttttgtaatataatgt |
251 |
Q |
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| T |
14924358 |
atatatactctttgaatcagttagggatgcattttagtataaaacacaattatatgattcttttgtaatataatgt |
14924433 |
T |
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