View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_47 (Length: 269)
Name: NF19104_low_47
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 12675919 - 12675791
Alignment:
| Q |
10 |
ataatactataccttaaataatcaaaactatttgacatctcaatcaaccatgaaatacaataaaggatcatcggagacatgattgctctacacatatagg |
109 |
Q |
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| T |
12675919 |
ataatactataccttaaataatcaaaactatttgacatctcaatcaaccatgaaatacaataaaggatcatcggagacatgattgctctacacatatagg |
12675820 |
T |
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| Q |
110 |
ctatagcactaaacaatttttcattggac |
138 |
Q |
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| T |
12675819 |
ctatagcactaaacaatttttcattggac |
12675791 |
T |
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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 12675733 - 12675660
Alignment:
| Q |
196 |
ggtgctacaatagcaccatgtgacacatggtacaaacaagttcctgacttcttatactctttggtcacatttat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
12675733 |
ggtgctacaatagcaccatgtgacacatggtacaaacaaattcctggcttcttatactctttggtcacatttat |
12675660 |
T |
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