View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_48 (Length: 268)
Name: NF19104_low_48
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_48 |
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| [»] chr1 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 1495983 - 1495732
Alignment:
| Q |
17 |
atatatactgtagcatgtgttagtttcctaagatgacataagtattgagtaactaccattttattttgttctgttatttgacagattgcaacatttatag |
116 |
Q |
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| T |
1495983 |
atatatactgtagcatgtgttagtttcctaagatgacataagtattgagtaactaccattttattttgttctgttatttgacagattgcaacatttatag |
1495884 |
T |
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| Q |
117 |
cagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttggttgtatagcttggtaacttatatccctcttga |
216 |
Q |
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| T |
1495883 |
cagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttggttgtatagcttggtaacttatatccctcttga |
1495784 |
T |
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| Q |
217 |
tttactcaaattcgcaatccgctattttctaagcgggaaggcttgggataat |
268 |
Q |
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| T |
1495783 |
tttactcaaattcgcaatccgctattttctaagcgggaaggcttgggataat |
1495732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 1463840 - 1464005
Alignment:
| Q |
81 |
tttgttctgttatttgacagattgcaacatttatagcagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgat |
180 |
Q |
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| T |
1463840 |
tttgttttgtaacttgacaggttgcaacagtcatagccgtgtatgcagattgggaatttgcaagaattaagggaatgggatggggttgggccggcgtaat |
1463939 |
T |
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| Q |
181 |
ttggttgtatagcttggtaacttatatccctcttgatttactcaaattcgcaatccgctattttct |
246 |
Q |
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| T |
1463940 |
ctggttgtacagtctggtgacctacatccctcttgatttactgaaaatcgcaatccgttatattct |
1464005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 1491523 - 1491617
Alignment:
| Q |
122 |
tatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttggttgtatagcttggtaacttatatccctcttga |
216 |
Q |
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| T |
1491523 |
tatgcaaattgggaatttgcaagaataaaggcaatgggacggggttaggtcgacgtaatttggttgtatagtttgataacctatatccctcttga |
1491617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 1489144 - 1489103
Alignment:
| Q |
179 |
atttggttgtatagcttggtaacttatatccctcttgattta |
220 |
Q |
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| T |
1489144 |
atttggttgtatagtttggtaacatatatccctcttgattta |
1489103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 26791569 - 26791716
Alignment:
| Q |
94 |
ttgacagattgcaacatttatagcagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttggttgtatagc |
193 |
Q |
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||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||| || |
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| T |
26791569 |
ttgacaggttgcaacagttatagcagtgtatgctaattgggaatttgcaagaatacaaggaatgggatggggttgggctggtgtaatttggttgtacagt |
26791668 |
T |
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| Q |
194 |
ttggtaacttatatccctcttgatttactcaaattcgcaatccgctat |
241 |
Q |
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| T |
26791669 |
ttggtaacctatatccctcttgatatactcaaaattgcaatccgctat |
26791716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 50277458 - 50277622
Alignment:
| Q |
104 |
gcaacatttatagcagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttggttgtatagcttggtaactt |
203 |
Q |
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| T |
50277458 |
gcaacttttatagcagtatatgctaattggagctttgcaagaattaagggaatgggatggggttgggctggtgtaatctggatgtacagtatagtgacat |
50277557 |
T |
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| Q |
204 |
atatccctcttgatttactcaaattcgcaatccgctattttctaagcgggaaggcttgggataat |
268 |
Q |
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| T |
50277558 |
atatcccccttgatatactcaaattcgtaatccgctatgttctaagtggcaaagcttgggataat |
50277622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 45196648 - 45196563
Alignment:
| Q |
99 |
agattgcaacatttatagcagtgtatgctaattggggatttgcaagaataaagggaatgggatggggttgggctggtgtgatttgg |
184 |
Q |
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| T |
45196648 |
agattgccacactgatagctgtgtatgcaaattgggagtttgcaagtatgaaaggaattggatggggttgggcaggtgtcatttgg |
45196563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 15870367 - 15870416
Alignment:
| Q |
98 |
cagattgcaacatttatagcagtgtatgctaattggggatttgcaagaat |
147 |
Q |
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| T |
15870367 |
cagattgctacattaatagcagtatatgccaactggggatttgcaagaat |
15870416 |
T |
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