View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_5 (Length: 584)
Name: NF19104_low_5
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 286 - 566
Target Start/End: Original strand, 49541708 - 49541990
Alignment:
| Q |
286 |
catagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtca |
382 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49541708 |
catagattggaatgattttaaatcatcaccctcactgctaacacaggatgagaatattttgggaactccatctgcagttctatccatatttttactgtca |
49541807 |
T |
|
| Q |
383 |
ttgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctcct |
482 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49541808 |
ttgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcaccc-aaaattacctcctcct |
49541906 |
T |
|
| Q |
483 |
aaatactggagttgtacatatgatatagatattagaaagttggaaaactttttatttcaccaaaggcatatcagagtttgtcaa |
566 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49541907 |
aaatactggagttgtacatatgatatagatattagaaagttggaaaactttttatttcaccaaaggcatatcacagtttgtcaa |
49541990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 49541394 - 49541668
Alignment:
| Q |
11 |
cacagatacgctgatattattaataatttgaagnnnnnnnnnnttatagttgaatttaattacatatatgagtgtcatgttagtgtcggacactgaacat |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
49541394 |
cacagatacgctgatattattaataatttgaagaaaaaaaa--ttatagttgaatttaattacatatatgagtgtcatgttagtgtcagacactggacac |
49541491 |
T |
|
| Q |
111 |
aagttcgattagaaacgttattaccaaacaaagtattgatataccccaatgtctgatgagttgttgtttggttcnnnnnnnaattaaatttaagataata |
210 |
Q |
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| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49541492 |
acgttcgattagaaacgttattaccaaacaaagtactgaaataccacaatgtctgatgagttgttgtttggttctttttttaattaaatttaagataata |
49541591 |
T |
|
| Q |
211 |
tgaagttattatttcatgagaaattcctagcaggcaataaaaattatgactattttgtaaaatgatagccttaatca |
287 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49541592 |
tgaagttattatttcatgagaaattcctagcaggcaataaaaattatgactattttgtaaaatgatagccataatca |
49541668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 287 - 540
Target Start/End: Original strand, 40917167 - 40917419
Alignment:
| Q |
287 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
40917167 |
atagattggaatgattttaaatcatcaccctcgctgctaacacacgatgaggatattttgggaaccccatctgcacttctatccatatttttaccgtcat |
40917266 |
T |
|
| Q |
384 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctccta |
483 |
Q |
| |
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|| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
40917267 |
tgcgcactttttgagttgtggcaccatccttctggttattcttaacagcagat----gtcgttgatgggaccaaacacacccaaaaattatctcctccta |
40917362 |
T |
|
| Q |
484 |
aatactggagttgtacatatgatatagatattagaaagttggaaaactttttatttc |
540 |
Q |
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|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40917363 |
aatactggagctctacatatgatatagatattagaaagtcggaaaactttttatttc |
40917419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 287 - 540
Target Start/End: Complemental strand, 2884174 - 2883922
Alignment:
| Q |
287 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
2884174 |
atagattggaatgattttaaatcatcaccctcgctgttaacacacgatgaggatattttgggaaccccgtctgcacttctatccatatttttaccgtcat |
2884075 |
T |
|
| Q |
384 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctccta |
483 |
Q |
| |
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|| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
2884074 |
tgggcaacttttgagttgcggcaccatcgttctggttattcttaacagcagat----gtcgttgatgggaccaaacaaacccaaaaattatctcctccta |
2883979 |
T |
|
| Q |
484 |
aatactggagttgtacatatgatatagatattagaaagttggaaaactttttatttc |
540 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
2883978 |
aatactggagttgtacatatgacatagatattaggaagttggaaaactttttatttc |
2883922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 287 - 540
Target Start/End: Original strand, 3150392 - 3150644
Alignment:
| Q |
287 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
3150392 |
atagattggaatgattttaaatcatcaccctcactgttaacacacgatgaggatattttgggaaccccgtctgcacttctatccatatttttaccgtcat |
3150491 |
T |
|
| Q |
384 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctccta |
483 |
Q |
| |
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|| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
3150492 |
tgggcaacttttgagttgcggcaccatcgttctggttattcttaacagcagat----gtcgttgatgggaccaaacaaacccaaaaattatttcctccta |
3150587 |
T |
|
| Q |
484 |
aatactggagttgtacatatgatatagatattagaaagttggaaaactttttatttc |
540 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
3150588 |
aatactggagttgtacatatgacatagatattaggaagttggaaaactttttatttc |
3150644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 291 - 540
Target Start/End: Complemental strand, 29251671 - 29251423
Alignment:
| Q |
291 |
attggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcattgtg |
387 |
Q |
| |
|
|||| |||||||||| |||||||||||| | ||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |||| || |
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|
| T |
29251671 |
attgaaatgattttagatcatcaccctcgcagctaacacacgatgaggatattctgggaaccccatctgcacttctatccatatttttaccctcatcatg |
29251572 |
T |
|
| Q |
388 |
cagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaata |
487 |
Q |
| |
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|| ||||||||| | ||| ||| ||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29251571 |
tagattttgagttaggacacaatctttctgcttattcttaacagcagat----gtagttgatgggaccaagcgcacccaaaaattacctcctcctaaata |
29251476 |
T |
|
| Q |
488 |
ctggagttgtacatatgatatagatattagaaagttggaaaactttttatttc |
540 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
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|
| T |
29251475 |
ttggagttgtacatatgacatagatactagaaagtcggaaaactttttatttc |
29251423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 536
Target Start/End: Complemental strand, 29254763 - 29254665
Alignment:
| Q |
438 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaacttttta |
536 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||| | |||||| |||| ||||||||||| || ||||||| ||||| |||||||| ||||||| |
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| T |
29254763 |
gatgttgttgatggcatcaaacgtacacaaaaattatcatctcctatatacaagagttgtacatctggtatagatgctagaatgttggaaagcttttta |
29254665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 382 - 537
Target Start/End: Complemental strand, 1086980 - 1086830
Alignment:
| Q |
382 |
attgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctcc |
481 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||| |||||||||||| ||||| |||||| |||||||||||| ||||||||| | |||| |||| |
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| T |
1086980 |
attgtgtagcttttgagttatggcaccatcattctgcttattcttaacaacagat----gtcgttaatgggaccaaacacacccaaaa-tcaccttctcc |
1086886 |
T |
|
| Q |
482 |
taaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
537 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
1086885 |
taaatactcgagttgtacatgtggtatagatactagaaagttggaaaactttttat |
1086830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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