View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_50 (Length: 266)
Name: NF19104_low_50
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 17476045 - 17475806
Alignment:
| Q |
17 |
caaatgtgctgacctctatgattactgcgcagttgtagttccgtatattacttgagtgaattgctgtttacagtgttacaagatatatatgtaccgcacg |
116 |
Q |
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| T |
17476045 |
caaatgtgctgacctctatgattactgcgcagttgtagttccgtatattacttgagtgaattgcggtttacagtgttacaagatatatatgtaccacaca |
17475946 |
T |
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| Q |
117 |
actatcacacccacgccccaaaacaaacagttgagcctgtaacgcatgtctaggccaaacacaagggcaggggtgaaggcagcttcacaatgctgtgcta |
216 |
Q |
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| T |
17475945 |
actatcacacccacgccccaaaacaaacagttgagcctgtaacgcatgtctaggccaaacacaagggcaggggtgaaggcagcttcacaatgctgtgcta |
17475846 |
T |
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| Q |
217 |
gctcaactccctcgactattgaccctcctctgttcctatg |
256 |
Q |
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| T |
17475845 |
gctcaactccctcgactattgaccctcctctgttcctatg |
17475806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 5948948 - 5948988
Alignment:
| Q |
58 |
cgtatattacttgagtgaattgctgtttacagtgttacaag |
98 |
Q |
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| T |
5948948 |
cgtatattacttgagtgaattagtgtttacagtgttacaag |
5948988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 38970140 - 38970092
Alignment:
| Q |
50 |
tgtagttccgtatattacttgagtgaattgctgtttacagtgttacaag |
98 |
Q |
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| T |
38970140 |
tgtagttccatatattacttgagtgaattagggtttacagtgttacaag |
38970092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 28820795 - 28820750
Alignment:
| Q |
52 |
tagttccgtatattacttgagtgaattgctgtttacagtgttacaa |
97 |
Q |
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| T |
28820795 |
tagttccatatattacttgagtgaattagagtttacagtgttacaa |
28820750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 32155574 - 32155541
Alignment:
| Q |
45 |
gcagttgtagttccgtatattacttgagtgaatt |
78 |
Q |
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| T |
32155574 |
gcagttatagttccgtatattacttgagtgaatt |
32155541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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