View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_52 (Length: 261)
Name: NF19104_low_52
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45588294 - 45588408
Alignment:
| Q |
1 |
ttttgtctctaaagtgaaaagttattaggattaactttct---------atttttcttataaaaaataacgaggtaacataaactagttaaaaatcaatt |
91 |
Q |
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| T |
45588294 |
ttttgtctctaaagtgaaaagttattaggattaactttctcaaaaatctatttttcttattaaaaataacgaggtaacataaactagttaaaaatcaatt |
45588393 |
T |
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| Q |
92 |
tttgttaacgattga |
106 |
Q |
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| T |
45588394 |
tttgttaacgattga |
45588408 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 45588498 - 45588555
Alignment:
| Q |
197 |
tgtaattggttgttgtcatttctgttacaggaacttaacttggatggcttcatatcac |
254 |
Q |
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| T |
45588498 |
tgtaattggttgttgtcatttctgttacaggaacttaacttggatggcttcatatcac |
45588555 |
T |
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