View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_53 (Length: 254)
Name: NF19104_low_53
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 28232679 - 28232758
Alignment:
| Q |
156 |
tggagagccaagatcatcttacaccatcacacgtggatgcatctcgaccatcccttggtttccctttgggcactgccctt |
235 |
Q |
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| T |
28232679 |
tggagagccaagatcatcttacaccatcacacgtggatgcatctcgaccatcccttggtttccctttgggcactgccctt |
28232758 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 28232557 - 28232640
Alignment:
| Q |
41 |
ccaaattcacattccaaaagtgattc-ttcccttcttttccttcttagtgttcctcaaacacatgagtgtaagaggagctagag |
123 |
Q |
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| T |
28232557 |
ccaaattcacattccaaaagtgattccttcccttcttttccttctttgtgttcctcaaacacatgagtgtaagaggagctagag |
28232640 |
T |
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