View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_55 (Length: 252)

Name: NF19104_low_55
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_55
NF19104_low_55
[»] chr8 (3 HSPs)
chr8 (17-239)||(27565655-27565877)
chr8 (81-132)||(44132903-44132954)
chr8 (81-134)||(20896217-20896270)
[»] chr6 (3 HSPs)
chr6 (55-121)||(28067333-28067399)
chr6 (81-140)||(24226058-24226119)
chr6 (78-139)||(6793495-6793558)
[»] chr5 (2 HSPs)
chr5 (76-141)||(3622227-3622294)
chr5 (78-121)||(9956628-9956671)
[»] chr2 (1 HSPs)
chr2 (78-139)||(1208617-1208680)
[»] chr4 (4 HSPs)
chr4 (81-132)||(50041844-50041895)
chr4 (81-132)||(50049066-50049117)
chr4 (78-141)||(36498626-36498691)
chr4 (83-121)||(53363704-53363742)
[»] chr1 (2 HSPs)
chr1 (78-166)||(49315761-49315851)
chr1 (81-137)||(19431420-19431476)
[»] chr3 (1 HSPs)
chr3 (47-105)||(40902292-40902350)
[»] chr7 (1 HSPs)
chr7 (53-113)||(40639206-40639267)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27565655 - 27565877
Alignment:
Q  17 aaatactttggtgattttgaatttgtgactttgatgattttagtgtatttaattgatcaacgagtgattaaaataaattatattgatgagatagaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565655 aaatactttggtgattttgaatttgtgactttgatgattttagtgtatttaattgatcaacgagtgattaaaataaattatattgatgagatagaataat 27565754  T
Q  117 tggttgagagaaatagagacaaagtaactaaactcgaaagcacccaagtggaatctttaattctctcgtcattagctacaaattttaaaaaagactacat 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||    
T  27565755 tggttgagagaaatagagacaaagtaactaaactcgaaggcacccaagtgaaatctttaattctcttgtcattagctacaaattataaaaaagactatat 27565854  T
Q  217 atatagtttccctctataaatct 239  Q
    ||||||||||| |||||||||||    
T  27565855 atatagtttccttctataaatct 27565877  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 44132903 - 44132954
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggttgagagaaatag 132  Q
    ||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||    
T  44132903 tgattaaaataaattattttgatgagagagaattattggttaagagagatag 44132954  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 20896217 - 20896270
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggttgagagaaatagag 134  Q
    ||||||||||||||||| | ||||||| ||||| |||| || ||||||||||||    
T  20896217 tgattaaaataaattatttagatgagagagaatgattgattaagagaaatagag 20896270  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 28067399 - 28067333
Alignment:
Q  55 tttagtgtatttaattgatcaacgagtgattaaaataaattatattgatgagatagaataattggtt 121  Q
    ||||||||||||||||||   | || ||||||||||||||||| ||||||||| ||||| |||||||    
T  28067399 tttagtgtatttaattgacagatgaatgattaaaataaattattttgatgagagagaatgattggtt 28067333  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 24226119 - 24226058
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggtt--gagagaaatagagacaaag 140  Q
    ||||||||||||||||| ||||||| | ||||| |||||||  |||||||||| ||||||||    
T  24226119 tgattaaaataaattattttgatgacagagaattattggttaggagagaaataaagacaaag 24226058  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 6793558 - 6793495
Alignment:
Q  78 gagtgattaaaataaattatattgatgagatagaataattggtt--gagagaaatagagacaaa 139  Q
    |||||||||||||||||||| ||||||||| | ||| |||||||  || ||| |||||||||||    
T  6793558 gagtgattaaaataaattattttgatgagagataattattggttaggatagagatagagacaaa 6793495  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 3622227 - 3622294
Alignment:
Q  76 acgagtgattaaaataaattatattgatgagatagaataattggtt--gagagaaatagagacaaagt 141  Q
    |||||||||||||||||||||| ||||||||| | ||| |||||||   ||||| |||||||||||||    
T  3622227 acgagtgattaaaataaattattttgatgagagaaaattattggttagaagagagatagagacaaagt 3622294  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 9956671 - 9956628
Alignment:
Q  78 gagtgattaaaataaattatattgatgagatagaataattggtt 121  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||    
T  9956671 gagtgattaaaataaattattttgatgagagagaattattggtt 9956628  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 1208680 - 1208617
Alignment:
Q  78 gagtgattaaaataaattatattgatgagatagaataattggtt--gagagaaatagagacaaa 139  Q
    |||||||||||||||||||| || |||||| ||||| |||||||  |||||| |||||||||||    
T  1208680 gagtgattaaaataaattattttaatgagagagaattattggttaagagagagatagagacaaa 1208617  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 50041844 - 50041895
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggttgagagaaatag 132  Q
    ||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||    
T  50041844 tgattaaaataaattattttgatgagagagaattattggttaagagagatag 50041895  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 50049066 - 50049117
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggttgagagaaatag 132  Q
    ||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||    
T  50049066 tgattaaaataaattattttgatgagagagaattattggttaagagagatag 50049117  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 36498626 - 36498691
Alignment:
Q  78 gagtgattaaaataaattatattgatgagatagaataattggtt--gagagaaatagagacaaagt 141  Q
    |||||||||||||||||||| |||||| || ||||| |||||||   ||||| |||||||||||||    
T  36498626 gagtgattaaaataaattattttgatgtgagagaattattggttagaagagagatagagacaaagt 36498691  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 53363704 - 53363742
Alignment:
Q  83 attaaaataaattatattgatgagatagaataattggtt 121  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  53363704 attaaaataaattattttgatgagaaagaataattggtt 53363742  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 49315761 - 49315851
Alignment:
Q  78 gagtgattaaaataaattatattgatgagatagaataattggt--tgagagaaatagagacaaagtaactaaactcgaaagcacccaagtg 166  Q
    |||||||||||||||||||| ||||||| ||| ||| |||| |  ||||||| ||||||||||||| ||  ||||| ||| ||| ||||||    
T  49315761 gagtgattaaaataaattattttgatgaaatataattattgattatgagagagatagagacaaagtcaccgaactcaaaatcactcaagtg 49315851  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 19431420 - 19431476
Alignment:
Q  81 tgattaaaataaattatattgatgagatagaataattggttgagagaaatagagaca 137  Q
    ||||||||||||||||| | ||||||| ||||| ||||||| ||||| ||| |||||    
T  19431420 tgattaaaataaattatttagatgagagagaatgattggttaagagagatatagaca 19431476  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 40902292 - 40902350
Alignment:
Q  47 ttgatgattttagtgtatttaattgatcaacgagtgattaaaataaattatattgatga 105  Q
    ||||||| |||| |||||||||| |||  | || |||||||||||||||||||||||||    
T  40902292 ttgatgactttaatgtatttaatcgatagatgaatgattaaaataaattatattgatga 40902350  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 40639206 - 40639267
Alignment:
Q  53 attttagtgtatttaattgatcaacgagtgattaaaataaa-ttatattgatgagatagaat 113  Q
    ||||||||||||||||||||| || || | ||||||||||| |||| ||||| |||||||||    
T  40639206 attttagtgtatttaattgattaaagaatcattaaaataaatttattttgataagatagaat 40639267  T

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