View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_56 (Length: 250)
Name: NF19104_low_56
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 7904134 - 7903901
Alignment:
| Q |
14 |
atatgcatcaacactgccacttctctttgatcttctttgattgttacacttcttttgtttcttgttagttaagtcatagtgagaaagagtcatgggaaag |
113 |
Q |
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| T |
7904134 |
atatgcatcaacactgccacttctctttgatcttctttgattgttacacttcttttgtttcttgttagttaagtcatagtgagaaagagtcatgggaaag |
7904035 |
T |
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| Q |
114 |
atcaagattggcatcaatggtactacaataatgacatta-nnnnnnnnnnnnngtcacataatttagttaaatgtttcagcatgtttttacttggatcat |
212 |
Q |
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| T |
7904034 |
atcaagattggcatcaatggtactacaataatgacattattttttttttttatgtcacataatttagttaaatgtttcagcatgtttttacttggatcat |
7903935 |
T |
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| Q |
213 |
taaatcaatgtgtatcacatatattacttcacaa |
246 |
Q |
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| T |
7903934 |
taaatcaatgtgtatcacatatattacttcacaa |
7903901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 7915088 - 7914983
Alignment:
| Q |
46 |
ttctttgattgttacacttcttttgtttcttgttagttaagt----catagtgagaaagagtcatgggaaagatcaagattggcatcaatggtactacaa |
141 |
Q |
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||||||| ||||||||| ||||||||||||||||| || || |||||||||||||||| ||||| ||| ||||||||| |||||||| |||| ||| |
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| T |
7915088 |
ttctttggttgttacaccccttttgtttcttgttaggtaggtaaatcatagtgagaaagagttatggggaagttcaagattgacatcaatgatactccaa |
7914989 |
T |
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| Q |
142 |
taatga |
147 |
Q |
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|||||| |
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| T |
7914988 |
taatga |
7914983 |
T |
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