View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_57 (Length: 250)
Name: NF19104_low_57
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8571717 - 8571959
Alignment:
| Q |
1 |
ccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagca |
100 |
Q |
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| T |
8571717 |
ccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagca |
8571816 |
T |
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| Q |
101 |
gctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttccaggtggaatgggacatg |
200 |
Q |
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| T |
8571817 |
gctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtggaatgggacatg |
8571916 |
T |
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| Q |
201 |
ttgttccaaacactccatcttcgtatgagttccttctctgctg |
243 |
Q |
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| T |
8571917 |
ttgttccaaacactccatcttcgtatgagttccttctctgctg |
8571959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 53754329 - 53754571
Alignment:
| Q |
1 |
ccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagca |
100 |
Q |
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| T |
53754329 |
ccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccagct |
53754428 |
T |
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| Q |
101 |
gctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttccaggtggaatgggacatg |
200 |
Q |
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| T |
53754429 |
gctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggcatg |
53754528 |
T |
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| Q |
201 |
ttgttccaaacactccatcttcgtatgagttccttctctgctg |
243 |
Q |
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| T |
53754529 |
ttgttcccgaaacaccatcttcgaatgagttccttctctgctg |
53754571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 28940785 - 28940921
Alignment:
| Q |
85 |
tccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttcca |
184 |
Q |
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||||||||||||||| || ||||| || ||||||||||| ||||| |||| || |||||||||||||| ||||||||| |||||||||||||||| ||| |
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| T |
28940785 |
tccaaaaccaccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttccca |
28940884 |
T |
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| Q |
185 |
ggtggaatgggacatgttgttccaaacactccatctt |
221 |
Q |
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| T |
28940885 |
ggagggatgggacatgttgtaccataaactccatctt |
28940921 |
T |
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