View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_58 (Length: 250)
Name: NF19104_low_58
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_58 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 12676107 - 12675910
Alignment:
| Q |
52 |
tactctaccttttcttgtctgtctttctcccttttttgctactttgttgaaaaaatatcagaaagttagatccttcaactcacatggaagcacttaattc |
151 |
Q |
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| T |
12676107 |
tactctaccgtttcttgtttgtctttctcc-ttttttgctactttgttgaaaaaatatcagaaagttagatccttcaactcacatggaagcacttaattc |
12676009 |
T |
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| Q |
152 |
catattagttagggtttccaattcacccaacaaagtttggtactcatccaccaaattaaatttcgtatgtacctaagtgttcacctcaaataatactat |
250 |
Q |
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| T |
12676008 |
caaattagttagggtttctaattcacccaacaaagtttggtactcatccaccaaattaaatttcttatgtacctaagtgttcacctcaaataatactat |
12675910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 12676184 - 12676145
Alignment:
| Q |
13 |
aatatcttactcttgtggtgcaccttgatcttatcatatt |
52 |
Q |
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| T |
12676184 |
aatatcttactcttgtggtgcaccttgatcttatcatatt |
12676145 |
T |
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