View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_6 (Length: 565)
Name: NF19104_low_6
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 39738998 - 39739553
Alignment:
| Q |
17 |
aataagagaacacagtcatcctcactccaatagctattttgttgtatcaactcattaaatgataaatatattcacttactcacttaaagggaagctcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39738998 |
aataagagaacacagtcatcctcactccaatagctattttgttgtatcaactcattaaatgataaatatattcacttactcacttaaagggaagctcaaa |
39739097 |
T |
|
| Q |
117 |
tgatataaccgtcgaagagtgagttatgtggtgatgg-----------------tagaggaatttgatcacttgttgactaaactaaatgcaaaaaagat |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39739098 |
tgatataaccgttgaagagtgagttatgtggtgatggaagagaaagtgcttccttagaggaatttgatcacttgttgactaaactaaatgcaaaaaagat |
39739197 |
T |
|
| Q |
200 |
aatagacagaccttaacggtaaaatggggctaataaagtcatatgcaaagatttttatcaagtatcagtaaatatattatgactcaaggtaaaagctgta |
299 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39739198 |
aatagacagaccttaacagtaaaatggggctaataaagtcatatgtaaatttttttatcaagtatcagtaaatatattatgactcaaggtaaaagctgta |
39739297 |
T |
|
| Q |
300 |
cataaccagttactatagctattcctagaattataagaggtggaagaagcacaaatgctcctatagttgcnnnnnnngttgaatcattcctttgagacac |
399 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39739298 |
cataaccagttaatatagctattcctagaattataagaggtggaagaagcacaaatgctcctatagttgcaaaaaaagttgaatcattcctttgagacac |
39739397 |
T |
|
| Q |
400 |
ttcatttagataactctgtctcttgatatttctcctttgtgatgttgttaagaactttgcactcactttcttcaagtttttacctaagggaaggctgaaa |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39739398 |
ttcatttagataactctgtctcttgatatttctcctttgtgatgttgttaagaactttgcactcactttcttcaagtttttacctaagggaagactgaaa |
39739497 |
T |
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| Q |
500 |
tcatcatccctttctccaaccaactgtgcaagctgttcccgaattgtaagtctctg |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39739498 |
tcatcatccctttctccaaccaactgtgcaagctgttcccgaattgtaagtctctg |
39739553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 340 - 551
Target Start/End: Complemental strand, 5667571 - 5667359
Alignment:
| Q |
340 |
tggaagaagcacaaatgctcctatagttgcnnnnnnngttgaatcattcctttgagacacttcatttagataactctgtctcttgatatttctcctttgt |
439 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5667571 |
tggaagaagcccaaatgctcctatagttgcaaaaaaagttgaatcattcctttgagacacttcatttagataactctgtctcttgatatttctcctttgt |
5667472 |
T |
|
| Q |
440 |
gatgttgttaagaactttgcactcactttc-ttcaagtttttacctaagggaaggctgaaatcatcatccctttctccaaccaactgtgcaagctgttcc |
538 |
Q |
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|| |||||||||||| |||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5667471 |
gaagttgttaagaacgttgcactcactttctttaaagtttttacctatgggaaggctaaaatcatcatccctttctccaaccaactgttcaagctgttcc |
5667372 |
T |
|
| Q |
539 |
cgaattgtaagtc |
551 |
Q |
| |
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|||||| |||||| |
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| T |
5667371 |
cgaattctaagtc |
5667359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 41082218 - 41082287
Alignment:
| Q |
32 |
tcatcctcactccaatagctattttgttgtatcaactcattaaatgataaatatattcacttactcactt |
101 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
41082218 |
tcatcctcactccaatagctatattgtgctatcaactcattaattgataaatctattcacttgctcactt |
41082287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 340 - 551
Target Start/End: Complemental strand, 13325698 - 13325486
Alignment:
| Q |
340 |
tggaagaagcacaaatgctcctatagttgcnnnnnnngttgaatcattcctttgagacacttcatttagataactctgtctcttgatatttctcctttgt |
439 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13325698 |
tggaagaagcccaaatgctcctatagttgcaaaaaaagttgaatcattcctttgagacacttcatttagataactctgtctcttgatatttctcctttgt |
13325599 |
T |
|
| Q |
440 |
gatgttgttaagaactttgcactcactttc-ttcaagtttttacctaagggaaggctgaaatcatcatccctttctccaaccaactgtgcaagctgttcc |
538 |
Q |
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|| |||||||||||| |||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13325598 |
gaagttgttaagaacgttgcactcactttctttaaagtttttacctatgggaaggctaaaatcatcatccctttctccaaccaactgttcaagctgttcc |
13325499 |
T |
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| Q |
539 |
cgaattgtaagtc |
551 |
Q |
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|||||| |||||| |
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| T |
13325498 |
cgaattctaagtc |
13325486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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