View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_64 (Length: 246)

Name: NF19104_low_64
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_64
NF19104_low_64
[»] chr5 (7 HSPs)
chr5 (38-246)||(39847829-39848037)
chr5 (66-245)||(39857663-39857843)
chr5 (99-245)||(39911206-39911354)
chr5 (99-246)||(37466252-37466401)
chr5 (99-239)||(39864859-39865010)
chr5 (109-242)||(39898450-39898587)
chr5 (109-244)||(39735917-39736054)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 39848037 - 39847829
Alignment:
Q  38 ctcattctgattcaaattgtaggttggagttggacaattgagagagcttcacaaggttgacgaattaaaactgtttctggaagtggagcgtgggctggta 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39848037 ctcattctgattcaaattgtaggttggagttggacaattgagagagcttcacaaggttgacgaattaaaactgtttctggaagtggagcgtgggctggta 39847938  T
Q  138 acatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtccttttgacaaacttcattattatataggatttatgtcccat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39847937 acatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtccttttgacaaacttcattattatataggatttatgtcccat 39847838  T
Q  238 tgcaccacc 246  Q
    |||||||||    
T  39847837 tgcaccacc 39847829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 39857843 - 39857663
Alignment:
Q  66 gttggacaattgagagagcttcacaaggttgacgaattaaaactgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatactat 165  Q
    ||||| ||||||| ||||||| || ||| |||| |||||||| |||||||||||||||||| || |||||| || |||||||||||||||||||||||||    
T  39857843 gttggccaattgaaagagctttacgaggatgacaaattaaaattgtttctggaagtggagcatgagctggtgacgtttatattatgaagttgtatactat 39857744  T
Q  166 tttgatagcatgaaacatcattcaaacagtcc-ttttgacaaacttcattattatataggatttatgtcccattgcaccac 245  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  39857743 tttgatagcatgaaacatcattcaaacagtcctttttgacaaacttcattattatataggatttatgccccattgcaccac 39857663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 39911354 - 39911206
Alignment:
Q  99 gaattaaaactgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaa--acagtc 196  Q
    |||||| || ||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||    
T  39911354 gaattagaattgtttttggaagtggagcgtgggccggtaacgtttatattatgaatttgtatactattttgatagcatgaaacatcattcaagcatagtc 39911255  T
Q  197 cttttgacaaacttcattattatataggatttatgtcccattgcaccac 245  Q
    || |||||||||| ||||||||| ||||||||| | |||||||||||||    
T  39911254 ctgttgacaaactacattattatttaggatttacgccccattgcaccac 39911206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 37466401 - 37466252
Alignment:
Q  99 gaattaaaactgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattc--aaacagtc 196  Q
    ||||||||| ||||| |||||||||||||||| | |||||  |||||||||||||| ||||||||||||| |||  ||||||||| || |  | |||| |    
T  37466401 gaattaaaattgtttttggaagtggagcgtggaccggtaatctttatattatgaagctgtatactatttttatataatgaaacattatccgaacacagcc 37466302  T
Q  197 cttttgacaaacttcattattatataggatttatgtcccattgcaccacc 246  Q
    || |||||||||| | ||||| | ||||||||||||||||||||||||||    
T  37466301 ctgttgacaaactacgttattgtttaggatttatgtcccattgcaccacc 37466252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 39865010 - 39864859
Alignment:
Q  99 gaattaaaactgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatac--tattttgatagcatgaaacatcattcaa--acag 194  Q
    ||||||||| ||||| |||||||||||| ||| | |||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||  | |     
T  39865010 gaattaaaattgtttttggaagtggagcatggaccggtaacatttatattatgaagttgtatactatattttgatagcacgaaacaccattcaagtaaaa 39864911  T
Q  195 tcct-------tttgacaaacttcattattatataggatttatgtcccattg 239  Q
    ||||        |||||||||| |||||||||||||||||| ||||||||||    
T  39864910 tcctatatatgattgacaaactgcattattatataggatttgtgtcccattg 39864859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 39898587 - 39898450
Alignment:
Q  109 tgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatactattttgatagc--atgaaacatcattcaaac--agtccttttgac 204  Q
    ||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||||  |||||  || |||||||| |||| |  |||| | |||||    
T  39898587 tgtttttggaagtggagtgtgggctggtaacatttgcattatgaagttgtatactatttcaatagcatataaaacatcaatcaagcgtagtcatattgac 39898488  T
Q  205 aaacttcattattatataggatttatgtcccattgcac 242  Q
    ||| | ||||||||| ||||||||| ||||||||||||    
T  39898487 aaagtacattattatttaggatttacgtcccattgcac 39898450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 39735917 - 39736054
Alignment:
Q  109 tgtttctggaagtggagcgtgggctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaa--acagtccttttgacaa 206  Q
    ||||| ||||||| |||||||| | ||||||||||| ||| ||||||||||| ||||||| ||   ||  ||||||||||||  | |||||| |||||||    
T  39735917 tgtttttggaagtcgagcgtggaccggtaacatttaaattgtgaagttgtatgctattttaatgttatataacatcattcaagcatagtcctgttgacaa 39736016  T
Q  207 acttcattattatataggatttatgtcccattgcacca 244  Q
    ||| | ||||||| ||||||||| | ||||| ||||||    
T  39736017 actacgttattatttaggatttacgccccatggcacca 39736054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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