View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_67 (Length: 244)
Name: NF19104_low_67
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_67 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 2058178 - 2058404
Alignment:
| Q |
18 |
agtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttg |
117 |
Q |
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| T |
2058178 |
agtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttg |
2058277 |
T |
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| Q |
118 |
tgttcaattatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaatatca |
217 |
Q |
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| T |
2058278 |
tgttctattatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaaaatca |
2058377 |
T |
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| Q |
218 |
tgaaccctaatttattgagcttctgtg |
244 |
Q |
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| T |
2058378 |
tgaaccctaatttattgagcttgtgtg |
2058404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 2062604 - 2062834
Alignment:
| Q |
18 |
agtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttg |
117 |
Q |
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| T |
2062604 |
agtatcgcgctttaattttgggtctaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttg |
2062703 |
T |
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| Q |
118 |
tgttcaat----tatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaat |
213 |
Q |
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| T |
2062704 |
tgttctattatatatggtttctacattaacaagaaaatgaaatttacaattttcttataacatgttattggttttgcaacagtttttgggttcatggaaa |
2062803 |
T |
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| Q |
214 |
atcatgaaccctaatttattgagcttctgtg |
244 |
Q |
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| T |
2062804 |
atcagcaacccgaatttattgagcttgtgtg |
2062834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 2054339 - 2054408
Alignment:
| Q |
148 |
aaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaatatca |
217 |
Q |
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| T |
2054339 |
aaatgaaatttacaattttcttatcatatgttattggttttgcaacagtttctgggttcatggaaaatca |
2054408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 2047506 - 2047606
Alignment:
| Q |
18 |
agtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttg |
117 |
Q |
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||||||| ||||||||||||||||| || ||||||||||||||| ||| ||| ||||||| |||||| |||||| || | | |||| |||| |||||||| |
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| T |
2047506 |
agtatcgtgctttaattttgggacttaatcaagcaatctataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatcaggtttg |
2047605 |
T |
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| Q |
118 |
t |
118 |
Q |
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| T |
2047606 |
t |
2047606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 2054067 - 2054177
Alignment:
| Q |
18 |
agtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttg |
117 |
Q |
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|||| |||||||| || |||||||| || ||||| ||| ||||| |||||| ||||||| ||||||||||||| ||| | ||||||||| |||||||| |
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| T |
2054067 |
agtaccgcgctttgatattgggactgaaacaagctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcaggtttg |
2054166 |
T |
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| Q |
118 |
tgttcaattat |
128 |
Q |
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| T |
2054167 |
tgttctattat |
2054177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 2088570 - 2088606
Alignment:
| Q |
173 |
atatgttattggttttgcaacagtttttgggttcatg |
209 |
Q |
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| T |
2088570 |
atatgttattggttttgcaacagtttaagggttcatg |
2088606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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