View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_71 (Length: 235)
Name: NF19104_low_71
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43073685 - 43073471
Alignment:
| Q |
1 |
ccgaaaattatggggttttccgaggtttgctggtgactgtgctaatggacacaagaagtcaataatcctgggagctagttcagagcacaaaaatgatata |
100 |
Q |
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| T |
43073685 |
ccgaaaattatggggttttccgaggtttgctggtgactgtgctaatggacacaagaagtcaacaatcctgggagctagttcagagcacaaaaatgatata |
43073586 |
T |
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| Q |
101 |
actgattcttgctctcaaatgatccttcagctccatgatgtctatgatccaaagaaggttagtaaccttaatgtttaaaggtttattgtgtactgtgttt |
200 |
Q |
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| T |
43073585 |
actgattcttgctctcaaatgatccttcagctccatgatgtctatgatccaaagaaggttagtagccttaatgtttaaaggtttattgtgtactgtgttt |
43073486 |
T |
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| Q |
201 |
gtatcgatatatgct |
215 |
Q |
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| T |
43073485 |
gtatcgatatatgct |
43073471 |
T |
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Back To:
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 5379983 - 5380058
Alignment:
| Q |
94 |
tgatataactgattcttgctctcaaatgatccttcagctccatgatgtctatgatccaaagaaggttagtaacctt |
169 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
5379983 |
tgatatcactgattcttgctctcagatgatccttcagctccatgatgtctatgatccaaataaggttagtagcctt |
5380058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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