View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_72 (Length: 232)
Name: NF19104_low_72
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_72 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2441904 - 2441673
Alignment:
| Q |
1 |
ccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctgattgctcagg |
100 |
Q |
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| T |
2441904 |
ccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctgattgctcagg |
2441805 |
T |
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| Q |
101 |
aaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtactagatgtatgaaccttcacttctgtcttgcatgcaatgttaccactacta |
200 |
Q |
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| T |
2441804 |
aaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtaatagatgtatgaaccttcacttctgtcttgcatgcaatattaccactacta |
2441705 |
T |
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| Q |
201 |
tcttgtacaagaccttgcaaaacaacaaccac |
232 |
Q |
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| T |
2441704 |
tcttgtataagaccttgcaaaacaacaaccac |
2441673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 13479421 - 13479305
Alignment:
| Q |
53 |
ggccaaccaattaattgtgtcactcacaaatttacctgattgctcaggaaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtacta |
152 |
Q |
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| T |
13479421 |
ggccaaccaattaatcctgccactcacaaattttccagatttctcaacaggcataacaccaaagggaaactcctgaatggttttccaaaaatgggtaccc |
13479322 |
T |
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| Q |
153 |
gatgtatgaaccttcac |
169 |
Q |
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| T |
13479321 |
aatgtatgaaccttcac |
13479305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7432213 - 7432383
Alignment:
| Q |
1 |
ccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctgattgctcagg |
100 |
Q |
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|||||||| |||||| ||||||| ||||||| || || ||| |||||| || |||||||||||||||| |||| |||||||| || | | |||| |
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| T |
7432213 |
ccaaatcataagaaacaataaagtatggactttccctataaaattcaatagaggtcaaccaattaattgtgccacttacaaattttcccgttctctcaat |
7432312 |
T |
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| Q |
101 |
aaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtactagatgtatgaaccttcactt |
171 |
Q |
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| T |
7432313 |
agggacaccgccaaaaggaaactcagggatgattttccaataattggtacccagtgtatgaaccttcactt |
7432383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12132974 - 12132889
Alignment:
| Q |
1 |
ccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaattta |
86 |
Q |
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| T |
12132974 |
ccaaatcaaaagaaacaataaaacgaggactttttggatcaagatcaatagaggttaaccaattaatcgtgccactcacaaattta |
12132889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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