View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19104_low_8 (Length: 498)
Name: NF19104_low_8
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19104_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 46236420 - 46236108
Alignment:
| Q |
18 |
cttcttgaagtattattttcattaaatctgataaacgtgaactataatcctcgaaaccactacatataacaatttccacccctcctggaattagatcaat |
117 |
Q |
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| T |
46236420 |
cttcttgaagtattattttcattaaatctgataaacgtgaactataatcctcgagaccactacatataacaatttccacccctcctggaattagatcaat |
46236321 |
T |
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| Q |
118 |
cttgacacacttcactacacttgaaggatctgctgataattcatttccagtttcaaccctacttgaactaaccatttctttcatcttatctctctttatt |
217 |
Q |
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| T |
46236320 |
cttgacacacttcactacacttgaaggatctgctgataattcatttccagtttcaaccctacttgaactaaccatttctttcattttatctctctttatt |
46236221 |
T |
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| Q |
218 |
tcaagttcattaattttctgcttcaaaatttgtacataatttgcagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgt |
317 |
Q |
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| T |
46236220 |
tcaagttcattaattttctgcttcaaaatttgtacataatttgcagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgt |
46236121 |
T |
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| Q |
318 |
tgtgaaaactacg |
330 |
Q |
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| T |
46236120 |
tgtgaaaactacg |
46236108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 46236027 - 46235954
Alignment:
| Q |
412 |
gaccttgatgagatcaaaaggaattgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgct |
485 |
Q |
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| T |
46236027 |
gaccttgatgagatcaaaaggaagtgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgct |
46235954 |
T |
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