View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19104_low_81 (Length: 209)

Name: NF19104_low_81
Description: NF19104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19104_low_81
NF19104_low_81
[»] chr1 (29 HSPs)
chr1 (1-174)||(32881532-32881705)
chr1 (3-136)||(30619156-30619287)
chr1 (1-136)||(41032555-41032690)
chr1 (1-86)||(16125287-16125372)
chr1 (1-86)||(17055751-17055836)
chr1 (21-136)||(47786090-47786204)
chr1 (1-83)||(21846109-21846191)
chr1 (1-136)||(12513490-12513618)
chr1 (1-86)||(23528868-23528953)
chr1 (1-136)||(13100402-13100537)
chr1 (1-88)||(18304641-18304728)
chr1 (1-119)||(19009747-19009865)
chr1 (4-83)||(14074318-14074397)
chr1 (1-85)||(17869583-17869667)
chr1 (1-86)||(9351895-9351980)
chr1 (1-88)||(25146598-25146686)
chr1 (24-147)||(16434744-16434867)
chr1 (4-86)||(9954865-9954947)
chr1 (4-58)||(18228479-18228533)
chr1 (1-86)||(9128670-9128755)
chr1 (33-136)||(17197311-17197414)
chr1 (1-43)||(13276141-13276183)
chr1 (1-58)||(27917232-27917289)
chr1 (24-88)||(21242857-21242921)
chr1 (27-118)||(39845055-39845146)
chr1 (1-30)||(13100300-13100329)
chr1 (54-86)||(9321567-9321599)
chr1 (52-88)||(17055997-17056033)
chr1 (54-86)||(42179903-42179935)
[»] chr7 (37 HSPs)
chr7 (1-136)||(39182368-39182503)
chr7 (1-136)||(14055469-14055603)
chr7 (1-136)||(14365497-14365631)
chr7 (21-134)||(22687051-22687164)
chr7 (1-109)||(7730168-7730276)
chr7 (1-131)||(21846235-21846364)
chr7 (1-126)||(1977761-1977885)
chr7 (1-88)||(8329874-8329961)
chr7 (3-134)||(8343586-8343717)
chr7 (1-90)||(8329807-8329896)
chr7 (1-136)||(17811560-17811695)
chr7 (1-88)||(26565378-26565465)
chr7 (1-83)||(24725307-24725389)
chr7 (1-86)||(5715497-5715582)
chr7 (1-134)||(8346250-8346383)
chr7 (1-136)||(11325191-11325325)
chr7 (27-136)||(4574968-4575077)
chr7 (1-86)||(44944677-44944762)
chr7 (1-136)||(5058741-5058875)
chr7 (5-88)||(8346361-8346444)
chr7 (7-70)||(27509260-27509323)
chr7 (62-136)||(10285685-10285759)
chr7 (1-83)||(20570720-20570802)
chr7 (1-86)||(4247568-4247653)
chr7 (1-86)||(24989606-24989690)
chr7 (1-86)||(27221626-27221711)
chr7 (3-97)||(30294460-30294553)
chr7 (1-89)||(26617306-26617394)
chr7 (1-79)||(6916991-6917068)
chr7 (1-83)||(11326495-11326577)
chr7 (1-97)||(9685115-9685211)
chr7 (27-136)||(8304324-8304433)
chr7 (27-88)||(21157523-21157584)
chr7 (1-81)||(8572350-8572429)
chr7 (31-127)||(17741886-17741984)
chr7 (30-82)||(23618265-23618317)
chr7 (30-86)||(25842563-25842619)
[»] chr3 (33 HSPs)
chr3 (1-136)||(25870104-25870239)
chr3 (1-136)||(3449092-3449227)
chr3 (1-136)||(17064519-17064654)
chr3 (1-125)||(6136362-6136486)
chr3 (1-136)||(9152768-9152901)
chr3 (1-134)||(27676648-27676781)
chr3 (1-136)||(22137489-22137624)
chr3 (1-136)||(42697060-42697194)
chr3 (36-136)||(41671426-41671526)
chr3 (1-125)||(13286156-13286280)
chr3 (1-100)||(28135974-28136073)
chr3 (1-136)||(28745988-28746123)
chr3 (4-125)||(8155922-8156043)
chr3 (12-136)||(10872497-10872621)
chr3 (1-136)||(17796779-17796912)
chr3 (1-136)||(19105219-19105352)
chr3 (1-136)||(21963643-21963778)
chr3 (1-136)||(21986079-21986214)
chr3 (1-84)||(24620031-24620114)
chr3 (1-86)||(20756234-20756319)
chr3 (13-134)||(15515042-15515163)
chr3 (27-133)||(8592184-8592290)
chr3 (1-69)||(39428115-39428183)
chr3 (30-136)||(3041464-3041570)
chr3 (27-136)||(20766683-20766792)
chr3 (34-86)||(22971054-22971106)
chr3 (1-69)||(29067489-29067557)
chr3 (49-86)||(18014251-18014288)
chr3 (49-136)||(8560239-8560326)
chr3 (1-88)||(27090648-27090741)
chr3 (53-141)||(13006089-13006176)
chr3 (1-86)||(22355898-22355979)
chr3 (29-141)||(27055333-27055445)
[»] chr6 (25 HSPs)
chr6 (1-141)||(23898023-23898162)
chr6 (5-136)||(30912188-30912319)
chr6 (1-86)||(19748545-19748630)
chr6 (1-133)||(2912046-2912178)
chr6 (1-136)||(3573681-3573817)
chr6 (5-136)||(7223731-7223862)
chr6 (1-136)||(17103407-17103542)
chr6 (1-136)||(11327344-11327479)
chr6 (1-82)||(15527946-15528027)
chr6 (1-86)||(22498272-22498357)
chr6 (1-88)||(4841659-4841746)
chr6 (1-136)||(7918132-7918267)
chr6 (1-83)||(17543565-17543647)
chr6 (1-86)||(26053128-26053213)
chr6 (1-86)||(26073181-26073266)
chr6 (27-141)||(33592928-33593041)
chr6 (1-49)||(10508886-10508934)
chr6 (1-83)||(27233134-27233216)
chr6 (27-97)||(20432414-20432484)
chr6 (12-112)||(27614462-27614562)
chr6 (27-86)||(27890624-27890683)
chr6 (33-93)||(1179068-1179129)
chr6 (46-133)||(23506099-23506186)
chr6 (1-86)||(17250268-17250355)
chr6 (56-136)||(21354942-21355022)
[»] chr8 (30 HSPs)
chr8 (1-136)||(29384094-29384229)
chr8 (1-134)||(17647209-17647342)
chr8 (1-136)||(6811032-6811166)
chr8 (3-126)||(15231835-15231958)
chr8 (3-136)||(22909986-22910118)
chr8 (4-139)||(17566313-17566448)
chr8 (1-134)||(15761142-15761275)
chr8 (1-136)||(45403242-45403376)
chr8 (6-136)||(5922265-5922395)
chr8 (1-86)||(7489115-7489200)
chr8 (1-136)||(11879812-11879947)
chr8 (1-136)||(11897228-11897363)
chr8 (1-88)||(23142386-23142473)
chr8 (3-136)||(24414069-24414202)
chr8 (1-136)||(31424379-31424511)
chr8 (1-83)||(15294881-15294963)
chr8 (1-83)||(15475250-15475332)
chr8 (1-86)||(32424546-32424631)
chr8 (5-136)||(24056352-24056483)
chr8 (30-134)||(2040360-2040464)
chr8 (1-110)||(3094052-3094159)
chr8 (1-60)||(8582255-8582314)
chr8 (1-86)||(19704289-19704374)
chr8 (36-86)||(27836131-27836181)
chr8 (49-86)||(16752283-16752320)
chr8 (24-86)||(40541652-40541714)
chr8 (33-86)||(7262006-7262059)
chr8 (1-30)||(15294779-15294808)
chr8 (1-30)||(15475148-15475177)
chr8 (54-126)||(6292201-6292273)
[»] chr2 (26 HSPs)
chr2 (1-126)||(15588647-15588771)
chr2 (27-136)||(19245827-19245936)
chr2 (1-86)||(19262148-19262233)
chr2 (1-132)||(35565740-35565874)
chr2 (1-88)||(16766997-16767084)
chr2 (7-136)||(8428440-8428569)
chr2 (1-136)||(20063935-20064070)
chr2 (1-83)||(1404995-1405077)
chr2 (1-110)||(13502481-13502590)
chr2 (1-86)||(25538977-25539062)
chr2 (1-83)||(30433027-30433109)
chr2 (1-141)||(31237753-31237893)
chr2 (55-124)||(23863283-23863352)
chr2 (1-80)||(1690566-1690645)
chr2 (1-88)||(27407003-27407090)
chr2 (39-134)||(31062311-31062406)
chr2 (27-86)||(974576-974635)
chr2 (30-136)||(20034004-20034110)
chr2 (30-86)||(27523928-27523984)
chr2 (13-88)||(29661093-29661168)
chr2 (27-136)||(21869103-21869212)
chr2 (1-86)||(36430060-36430145)
chr2 (30-86)||(7302023-7302079)
chr2 (36-97)||(15627991-15628052)
chr2 (53-126)||(19492132-19492205)
chr2 (30-83)||(34578130-34578183)
[»] scaffold0510 (1 HSPs)
scaffold0510 (1-121)||(1-120)
[»] chr4 (29 HSPs)
chr4 (1-136)||(6346737-6346872)
chr4 (1-97)||(10143112-10143208)
chr4 (1-124)||(37240450-37240574)
chr4 (3-112)||(5361771-5361880)
chr4 (1-86)||(8010968-8011053)
chr4 (1-136)||(9911193-9911328)
chr4 (1-125)||(17466291-17466415)
chr4 (1-136)||(8889438-8889563)
chr4 (1-136)||(9770324-9770459)
chr4 (3-97)||(10394824-10394918)
chr4 (11-112)||(5943065-5943166)
chr4 (1-88)||(24719787-24719874)
chr4 (1-136)||(7045154-7045291)
chr4 (1-86)||(5375877-5375962)
chr4 (1-86)||(23064793-23064878)
chr4 (1-86)||(36121035-36121120)
chr4 (21-136)||(18459413-18459528)
chr4 (1-83)||(7044975-7045057)
chr4 (14-136)||(7452731-7452852)
chr4 (24-136)||(55476223-55476335)
chr4 (8-83)||(8931441-8931516)
chr4 (31-136)||(4157269-4157377)
chr4 (31-136)||(4157556-4157664)
chr4 (27-136)||(8743547-8743656)
chr4 (1-84)||(9149556-9149640)
chr4 (1-97)||(13551493-13551589)
chr4 (27-69)||(5884129-5884171)
chr4 (49-86)||(8367462-8367499)
chr4 (52-88)||(4157050-4157086)
[»] scaffold0048 (2 HSPs)
scaffold0048 (1-135)||(61097-61231)
scaffold0048 (1-83)||(48497-48579)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-137)||(8740-8876)
[»] scaffold0534 (1 HSPs)
scaffold0534 (4-139)||(885-1020)
[»] chr5 (26 HSPs)
chr5 (1-136)||(43005641-43005776)
chr5 (1-83)||(43235080-43235162)
chr5 (1-96)||(21058978-21059074)
chr5 (1-81)||(38158101-38158181)
chr5 (1-83)||(41688501-41688583)
chr5 (1-136)||(18843927-18844062)
chr5 (1-136)||(27339969-27340104)
chr5 (1-81)||(23172265-23172345)
chr5 (21-112)||(24648241-24648332)
chr5 (27-136)||(13341479-13341588)
chr5 (1-83)||(19579155-19579237)
chr5 (1-83)||(20321155-20321237)
chr5 (3-86)||(19042260-19042343)
chr5 (1-136)||(18051315-18051450)
chr5 (7-82)||(26021537-26021612)
chr5 (27-86)||(41427657-41427716)
chr5 (24-110)||(19377838-19377924)
chr5 (34-86)||(15051929-15051981)
chr5 (74-136)||(19979853-19979915)
chr5 (27-69)||(30799635-30799677)
chr5 (39-88)||(17624851-17624900)
chr5 (24-83)||(15446447-15446506)
chr5 (49-86)||(22645559-22645596)
chr5 (1-30)||(22645710-22645739)
chr5 (27-76)||(22984643-22984692)
chr5 (27-68)||(30804172-30804213)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-83)||(56260-56342)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-136)||(8653-8788)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-84)||(93539-93622)
[»] scaffold0028 (1 HSPs)
scaffold0028 (24-136)||(145823-145935)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-84)||(7289-7372)
[»] scaffold0150 (1 HSPs)
scaffold0150 (24-97)||(33173-33246)
[»] scaffold0079 (1 HSPs)
scaffold0079 (30-86)||(14758-14814)
[»] scaffold0027 (1 HSPs)
scaffold0027 (30-86)||(132947-133003)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 32881532 - 32881705
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||    
T  32881532 attttgattgcgattttacaatttcttatatcgattctacaaacgtagttgagtaaaatccttcgatttcagttgcgattttacgattgtcgattttgct 32881631  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttgaaaatcctgattatatatattgaatgatgcatttttcca 174  Q
    |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32881632 tttctctttcaatctgaagcaaaatcccgattttgaaaaccctgattatatatattgaatgatgcatttttcca 32881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 30619156 - 30619287
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || |    
T  30619156 tttgattgcgattttacaatttttcatatcgattctacaaaagtagttgagtaaaatccttcgatttttgttgcga-tttacgattgtcgattttgctct 30619254  T
Q  103 tctctttcgatatgaagcaaaatcccgattttga 136  Q
    ||||||||||  ||||| ||||||||||||||||    
T  30619255 tctctttcgacctgaag-aaaatcccgattttga 30619287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 41032690 - 41032555
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||| |  ||||| ||    
T  41032690 attttaattgcgattttacaatttcttatatcgattctacaaaactagttgagtaaaattcttcgattttagttgcgattttacgattatcaattttgct 41032591  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||||||||| |  ||||| |||||||| |||||||    
T  41032590 cttctctttcaacctgaagtaaaatccctattttga 41032555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 16125372 - 16125287
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  16125372 attttgattgcgattttacaatttcttatatcgattctacaaatgtccttgagtaaaatccttcgattttgattgcgattttacga 16125287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 17055836 - 17055751
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  17055836 attttgattgcaattttacaatttcttgtatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacga 17055751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 47786090 - 47786204
Alignment:
Q  21 atttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagc 120  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||||||||| |  | |||     
T  47786090 atttcttatatcaattctacaaaagtagttgagtaaaatccttcgattttggttgtgattttacgattgtcgattttgctcttctctttcaacctaaag- 47786188  T
Q  121 aaaatcccgattttga 136  Q
    ||||||||||||||||    
T  47786189 aaaatcccgattttga 47786204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21846191 - 21846109
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  21846191 attttgattgcgattttacaatttcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttta 21846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 12513490 - 12513618
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||       ||||| | ||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||    
T  12513490 attttgattgcgattttacaatttcttat-------ctacagaagtagttgagtaaaatcctttgattttggttgcgattttacaattgtcgattttgct 12513582  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||| ||  |||||||||||||| |||||||    
T  12513583 cttctcttttgacctgaagcaaaatcccaattttga 12513618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 23528868 - 23528953
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  23528868 attttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 23528953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13100402 - 13100537
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||| ||||||| |||||||||||||| |   |||||| |     
T  13100402 attttgattgcgattttaagatttcttatatcgattctacaaatgtccttgagtaaaatcctttgattttgattgcgattttacgagttccgattttgcc 13100501  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||| ||| ||||||||||||    
T  13100502 attccctttcgacttgaagtaaagtcccgattttga 13100537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18304728 - 18304641
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  || ||||||||||||||||||||  |||||||||||||||    
T  18304728 attttgattgcgattttacaatttcctatatcgattctacaaaagtcctttagtaaaatccttcgattttgaatgcgattttacgatt 18304641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19009865 - 19009747
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| |||||||||| |||||| ||  ||||||||||||||| ||||||| |||||||||||||| |   |||||| ||    
T  19009865 attttgattgcgattttacaatttcctatatcgattttacaaaagttcttgagtaaaatcctttgattttgattgcgattttacgagtcccgattttgct 19009766  T
Q  101 tttctctttcgatatgaag 119  Q
     ||| |||||||| |||||    
T  19009765 attccctttcgatctgaag 19009747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 14074397 - 14074318
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| ||| |||||||    
T  14074397 ttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtgatttta 14074318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17869667 - 17869583
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacg 85  Q
    |||||||||||||||||||||||| ||| || ||||||| ||| ||  ||||||||||||||| ||||||| |||||||||||||    
T  17869667 attttgattgcgattttacaattttttacattgattctataaaagtccttgagtaaaatcctttgattttgattgcgattttacg 17869583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9351980 - 9351895
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| ||  |||  ||||||||| |||||||| ||||||||||||||    
T  9351980 attttgattgtgattttacaatttcctatatagattctacaaaagtccttggataaaatcctacgattttgattgcgattttacga 9351895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25146686 - 25146598
Alignment:
Q  1 attttgattgcgatttt-acaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||| | |||||  |||||||||||||| || |   ||||||||||||||||||||||| ||||||||||||||||    
T  25146686 attttgattgcgatttttagaattttctatatcgattctacgaaagaccttgagtaaaatccttcgattttgattgcgattttacgatt 25146598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 16434744 - 16434867
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaa 123  Q
    ||||||||| |||||||||| || || ||||||||||||||||||||| |||| ||||||||||| | |||||| || ||| |||| ||  |  || |||    
T  16434744 tcttatatcaattctacaaaagttgtcgagtaaaatccttcgattttgattgcaattttacgattttcgattttgctattcccttttgacctagagaaaa 16434843  T
Q  124 atcccgattttgaaaatcctgatt 147  Q
    |||| |||||||| |||| |||||    
T  16434844 atcctgattttgacaatcttgatt 16434867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 9954947 - 9954865
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||||||| ||||| ||||||  ||| ||  ||  ||||||||||||||||||| ||||||||||||||    
T  9954947 ttgattgcgattttacaatttcctatatggattcttgaaaagtcctttggtaaaatccttcgattttgattgcgattttacga 9954865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 18228479 - 18228533
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaa 58  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  18228479 ttgattgcgattttacgatttcttatatcgattctacaaaagaagttgagtaaaa 18228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9128755 - 9128670
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||  ||||||||| |||||||  |  || |||||||||||||||||||| | | ||||||||||    
T  9128755 attttgattgcgattttacaattttctatatcgatcctacaaaaatcctttagtaaaatccttcgattttgatcgtgattttacga 9128670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 17197414 - 17197311
Alignment:
Q  33 gattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgatt 132  Q
    ||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| |   |||||| ||  || |||||||  ||||| ||| ||||||||    
T  17197414 gattctacaaaagtccttgagtaaaatccttcgattttagttgcgattttacgagttccgattttgctactccctttcgacttgaagtaaagtcccgatt 17197315  T
Q  133 ttga 136  Q
    ||||    
T  17197314 ttga 17197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13276183 - 13276141
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaa 43  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  13276183 attttgattgcaattttacaatttcttatatcgattctacaaa 13276141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27917289 - 27917232
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaa 58  Q
    ||||||||||||||  |||||||||||||||| ||| |||||| ||||||||||||||    
T  27917289 attttgattgcgataatacaatttcttatatcaattatacaaaagtagttgagtaaaa 27917232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 21242921 - 21242857
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||| |  || |||||||||||||    
T  21242921 tcttatatcgattctacaaaattagttgagtaaaattcttcaattgtaattacgattttacgatt 21242857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 39845146 - 39845055
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaa 118  Q
    |||||||| | ||||||  ||||||||||||||| ||| |||||  |||| ||||||| ||| | |||||| || |||||||||||| ||||    
T  39845146 tatatcgactttacaaaaatagttgagtaaaatcattcaattttaattgcaattttacaattttcgattttgctattctctttcgatttgaa 39845055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13100300 - 13100329
Alignment:
Q  1 attttgattgcgattttacaatttcttata 30  Q
    ||||||||||||||||||||||||||||||    
T  13100300 attttgattgcgattttacaatttcttata 13100329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 9321599 - 9321567
Alignment:
Q  54 taaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||| ||||||||||||||    
T  9321599 taaaatccttcgattttgattgcgattttacga 9321567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 17056033 - 17055997
Alignment:
Q  52 agtaaaatccttcgattttggttgcgattttacgatt 88  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  17056033 agtaaaatccatcgattttgattgcgattttacgatt 17055997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 42179935 - 42179903
Alignment:
Q  54 taaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||| ||||||||||||||    
T  42179935 taaaatccttcgattttgattgcgattttacga 42179903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 39182368 - 39182503
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  39182368 attttggttgcgattttacaatttcttatatcgattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacgattgtcgatttttct 39182467  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||| ||  |||||||||||| |||||||||    
T  39182468 cttctctttggaactgaagcaaaatcacgattttga 39182503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14055469 - 14055603
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||    
T  14055469 attttgattgcgattttgcaatttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttaccattgtcgattttgct 14055568  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
      ||||||||||  ||||||||||| ||||||||||    
T  14055569 catctctttcgacctgaagcaaaat-ccgattttga 14055603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14365497 - 14365631
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||    
T  14365497 attttgattgcgattttgcaatttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttaccattgtcgattttgct 14365596  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
      ||||||||||  ||||||||||| ||||||||||    
T  14365597 catctctttcgacctgaagcaaaat-ccgattttga 14365631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 22687164 - 22687051
Alignment:
Q  21 atttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagc 120  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||| | |||||| || |||||||||||| ||||||    
T  22687164 atttcttatatcgattctacaaaagtagttgagtaaaattcttcaattttggttgtgattttacgattctcgattttgctcttctctttcgatctgaagc 22687065  T
Q  121 aaaatcccgatttt 134  Q
    ||||||||||||||    
T  22687064 aaaatcccgatttt 22687051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 7730276 - 7730168
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||    
T  7730276 attttgattgcgattttacaatttcttatatcaattatacaaaagtagttgagtaaaaccattcgattttggttgcgattttacgattgatgattttgct 7730177  T
Q  101 tttctcttt 109  Q
     ||||||||    
T  7730176 cttctcttt 7730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 21846364 - 21846235
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||    
T  21846364 attttgattgtgattttacgatttcttatatcgattctataaaagtagttgattaaaatccttcgattttggttgcgattttaggatttttgattttgct 21846265  T
Q  101 tttctctttcgatatgaagcaaaatcccgat 131  Q
     | |||||||||  || ||||||||||||||    
T  21846264 ctcctctttcgacctg-agcaaaatcccgat 21846235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1977761 - 1977885
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||  ||||||||||||||||||| |||  || ||||||||||||||||||||||| |||||||||||||||||| |||||| ||    
T  1977761 attttgattgcgattttaggatttcttatatcgattctaaaaaa-taattgagtaaaatccttcgattttgattgcgattttacgattgtcgatttttct 1977859  T
Q  101 tttctctttcgatatgaagcaaaatc 126  Q
     |||||||||||  ||||||||||||    
T  1977860 cttctctttcgacctgaagcaaaatc 1977885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8329961 - 8329874
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  8329961 attttgattgcaattttacgatttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgattttacgatt 8329874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 8343717 - 8343586
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    ||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  ||||||||||||  |||||  | |    
T  8343717 tttgattgcgattttacgattttttatatcaattctacaaaagtagttgagtaaaatacttcgattttgattgcatttttacgattgtcaattttgttct 8343618  T
Q  103 tctctttcgatatgaagcaaaatcccgatttt 134  Q
    ||||||||||  ||||||||||| | ||||||    
T  8343617 tctctttcgacctgaagcaaaattctgatttt 8343586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8329896 - 8329807
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgt 90  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||| |||| |||||| ||||||    
T  8329896 attttgattgcgattttacgatttcttatatcaattctacaaaagtagttgagtaaaatccttcaattttgattgcaattttatgattgt 8329807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17811560 - 17811695
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||  |||||||||||| |||||||||| |||||||||||||| |   |||||| ||    
T  17811560 attttgattgcgattttacaattttctatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacgaatcccgattttgct 17811659  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||| ||  ||||| ||| ||||||||||||    
T  17811660 attcccttttgacctgaagtaaagtcccgattttga 17811695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26565465 - 26565378
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||| ||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  26565465 attttgattgcaattttacgattttttatattgattctacaaaagtagttgagtaaaatccttcgattttgattacgattttacgatt 26565378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24725389 - 24725307
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||| ||||||| |||||||||||    
T  24725389 attttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatcctttgattttgattgcgatttta 24725307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5715497 - 5715582
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| ||||||||||||||    
T  5715497 attttgattgcgattttataatttcctatatcgattctacaaaagtccttgagtaaaatccctcgattttgattgcgattttacga 5715582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 8346383 - 8346250
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||| |||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||  | ||||||||||  |||||  |    
T  8346383 attttgattgcgatattacgatttcttatatcaattctataaaagtagttgagtaaaatccttcgattttgtttgcattcttacgattgtcaattttgtt 8346284  T
Q  101 tttctctttcgatatgaagcaaaatcccgatttt 134  Q
     |||||||||||   |||| ||||||| ||||||    
T  8346283 cttctctttcgaccggaagtaaaatcctgatttt 8346250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11325191 - 11325325
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||  |||||||||||||| ||||| ||| |||| | |||||||||||||| ||||  | ||||||||||||||||||||||| |||||| ||    
T  11325191 attttgattgtaattttacaatttct-atatcaattttacagaagtagttgagtaaaacccttgaaatttggttgcgattttacgattgtcgattttgct 11325289  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||| ||  |||||||| ||||| |||||||    
T  11325290 cttctcttttgacgtgaagcaagatcccaattttga 11325325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 4574968 - 4575077
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    ||||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||| ||||||||||| ||| ||||| |  ||||| ||||||    
T  4574968 tatatcgattctacaaaagtagttgagtagaattctttgattttgattgcgattttacgatttttgattttactattccctttcaacctgaagaaaaatc 4575067  T
Q  127 ccgattttga 136  Q
     | |||||||    
T  4575068 tcaattttga 4575077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44944762 - 44944677
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||  |||||||||  ||||||||||||||    
T  44944762 attttgattgcgattttacaatttcttatatcgattctacaaaagtccttaagtaaaattgttcgattttaattgcgattttacga 44944677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5058741 - 5058875
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||  |  |||| |||||||||||||||||| |||| ||||||||| |   |||||| ||    
T  5058741 attttgattgcgattttacaattttttatatcgattc-acaaaattccttgattaaaatccttcgattttgattgcaattttacgaattccgattttgct 5058839  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||| ||| ||||| ||| ||||||||||||    
T  5058840 attcccttttgatctgaagtaaagtcccgattttga 5058875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 8346444 - 8346361
Alignment:
Q  5 tgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    |||||| |||||||  |||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||    
T  8346444 tgattgagattttatgatttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgatattacgatt 8346361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 27509323 - 27509260
Alignment:
Q  7 attgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgatttt 70  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  27509323 attgcgattttacaatttcttatatcgattctataaaagtagttgagtaaaatccttcaatttt 27509260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 10285759 - 10285685
Alignment:
Q  62 ttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||  ||||| ||||||||||||||||    
T  10285759 ttcgattttgattgcgattttacgattgttgatttttctcttctctttcgacctgaagtaaaatcccgattttga 10285685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20570802 - 20570720
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||  |||||||||||| ||| |||||| |||||||||||    
T  20570802 attttgattgtgattttataatttcttatatcgattctacaaaagtccttgagtaaaatctttcaattttgattgcgatttta 20570720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4247568 - 4247653
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |  ||||||||||||||| || |||| ||||||||||||||    
T  4247568 attttgattgcgattttatgatttcttatatcgattctacaaaaatccttgagtaaaatcctttgaatttgattgcgattttacga 4247653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24989690 - 24989606
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||  || |||||||||||||||||||| |||| |||||||||    
T  24989690 attttgattgcgattttataatttcctatatcgattctacaaaagtcctt-agtaaaatccttcgattttgattgccattttacga 24989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27221626 - 27221711
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||| ||||||||||||||||||| || |||||||||||||| ||    ||||||||||||||||||||| ||||||||||||||    
T  27221626 attttaattgcgattttacaatttcctacatcgattctacaaaagtctccgagtaaaatccttcgattttgattgcgattttacga 27221711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 30294460 - 30294553
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||| |||||||  ||||||| ||||||||||| ||| |||||| |||||||||||||||||||| ||| || ||||||||| ||||||||    
T  30294460 tttgattgtgattttaggatttcttttatcgattctataaaagtagttaagtaaaatccttcgattttgattgtga-tttacgatttttgatttt 30294553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26617394 - 26617306
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattg 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||  || ||||| ||||||||| || ||| ||||||||||| ||||||    
T  26617394 attttgattgcgattttacaattttttatatcctttctacaaaaataattgagcaaaatcctttgaatttagttgcgatttttcgattg 26617306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6916991 - 6917068
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgat 79  Q
    ||||||||||| |||||| ||||||||||||||||| ||  || |||||||||||||||||||| |||||| |||||||    
T  6916991 attttgattgcaattttataatttcttatatcgatt-tatgaaagtagttgagtaaaatccttcaattttgattgcgat 6917068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11326495 - 11326577
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| ||  ||||||||||| |||| |||||| ||| |||||||    
T  11326495 attttgattgcgattttacaatttcctatattgattccacaaaagtccttgagtaaaatacttcaattttgattgtgatttta 11326577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9685211 - 9685115
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||| ||||||| |||||  || |||||||||| ||| ||  | ||||||||||||||||||||  |||||||||||||| | ||||||||    
T  9685211 attttgattgtgattttaaaattttctaaatcgattctataaaagtcctcgagtaaaatccttcgattttaattgcgattttacgagtcttgatttt 9685115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 8304324 - 8304433
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    |||||| |||||||||| ||  ||||||||||||||||||||||| ||| |||||||||| |   |||||| ||  ||||||||||  ||||| ||| ||    
T  8304324 tatatcaattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttacgagtcgcgattttgctactctctttcgacttgaagtaaagtc 8304423  T
Q  127 ccgattttga 136  Q
     |||||||||    
T  8304424 tcgattttga 8304433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 21157584 - 21157523
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||| ||||||||||| |||||||| ||||||||||| |||||| ||| ||||||||||||    
T  21157584 tatatagattctacaaaagtagttgaataaaatccttcaattttgattgagattttacgatt 21157523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8572350 - 8572429
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattt 81  Q
    ||||||||||| |||||| ||||||| ||||| |||||||||||||  |||| ||| ||| |||||||||| |||||||||    
T  8572350 attttgattgcaattttataatttct-atatcaattctacaaatgtccttgattaacatctttcgattttgattgcgattt 8572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 17741886 - 17741984
Alignment:
Q  31 tcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttc--tctttcgatatgaagcaaaatcc 127  Q
    ||||||||| ||| |||||| ||||||||||||| |||||| |||| ||||||||||| | |||||| || |||  ||||||||  ||||| |||||||    
T  17741886 tcgattctaaaaaagtagttaagtaaaatccttcaattttgattgcaattttacgattttcgattttgctattctttctttcgacctgaagtaaaatcc 17741984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 23618317 - 23618265
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttt 82  Q
    |||||||||||||| ||  ||||||||||| ||||||||||| ||||||||||    
T  23618317 atcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgatttt 23618265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25842619 - 25842563
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||| ||   ||||||||||||| | |||||| ||||||||||||||    
T  25842619 atcgattctacaaaagttcatgagtaaaatcctccaattttgattgcgattttacga 25842563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 25870239 - 25870104
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  25870239 attttgattgcgattttacaatttcttatatcgattctacaaacttagttgagtaaaatcctttgattttggttgcgattttacgattgtcgattttact 25870140  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||  | |||||||||| |||||||||    
T  25870139 cttctctttcgacctaaagcaaaatctcgattttga 25870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3449227 - 3449092
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||    
T  3449227 attttgattgcgattttacattttcttatatcgattctacaaaagtagttgaataaaatcattcgattttggttgcgattttacgattgtcgattttgct 3449128  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||||||||| |  | |||||||||||| |||||||    
T  3449127 cttctctttcaacctaaagcaaaatcccaattttga 3449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17064519 - 17064654
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |    
T  17064519 attttgattgcaattttacaatttcttatattgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacgattgtcgattttgat 17064618  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     || ||||||||  |||||||||||||| |||||||    
T  17064619 cttttctttcgacctgaagcaaaatcccaattttga 17064654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6136486 - 6136362
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||| |||||||| ||    
T  6136486 attttgattgtgattttacgatttcttatatcgattctataaaagtagttgagtaaaatcttttgattttgattgcgattttacgatttttgattttgct 6136387  T
Q  101 tttctctttcgatatgaagcaaaat 125  Q
    |||| ||| ||||||||||||||||    
T  6136386 tttcccttccgatatgaagcaaaat 6136362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9152901 - 9152768
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||||||||| || ||||||||||||||  ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  9152901 attttgattgtgattttacaatttcata-atcgattctacaaaaatagttgagtcaaatctttcgattttggttacgattttacgattgttgattttact 9152803  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||  | ||||||||||| ||||||||    
T  9152802 cttctctttcgacct-aagcaaaatcctgattttga 9152768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27676648 - 27676781
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||| |||| | |||||| ||    
T  27676648 attttgattgtgattttacgatttcttatatcgattttacaaaagtagttgagtaaaatctttcgattttgattgcgattttaagattttcgattttgct 27676747  T
Q  101 tttctctttcgatatgaagcaaaatcccgatttt 134  Q
     ||| |||||||  ||||||||||||| ||||||    
T  27676748 cttccctttcgacttgaagcaaaatcctgatttt 27676781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22137489 - 22137624
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||  | |||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |||| ||||||| ||    
T  22137489 attttgattttggttttacgatttcttatatcgattctacaaaagtagttgagtaaaattctttgattttggttgtgattttactattgctgattttgct 22137588  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||  |||| ||||||| |||||||||    
T  22137589 cttctctttcgacctgaaacaaaatctcgattttga 22137624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42697060 - 42697194
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||| ||||  ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||||| |||||| ||    
T  42697060 attttgattgcgagtttatgatttcttatatcgattctacaaaagtagttgaataaaatccttcaattttagttgcgattttacaattgtcgatttt-ct 42697158  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||||| |||||  ||||||||||||| ||||||||    
T  42697159 cttctcattcgacctgaagcaaaatcctgattttga 42697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 41671426 - 41671526
Alignment:
Q  36 tctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttg 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |||||| || |||||||||||  |||||||||||||||||||||    
T  41671426 tctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacaattatcgattttgctcttctctttcgacctgaagcaaaatcccgattttg 41671525  T
Q  136 a 136  Q
    |    
T  41671526 a 41671526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 13286156 - 13286280
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||| | |||||||| ||    
T  13286156 attttcattgtgattttacgatttcttatatcgattctacaaaagtagttgagtaaaatcttttgattttgattgcgattttacgagttttgatttttct 13286255  T
Q  101 tttctctttcgatatgaagcaaaat 125  Q
     ||| ||| |||  |||||||||||    
T  13286256 cttcccttccgacctgaagcaaaat 13286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28135974 - 28136073
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||    
T  28135974 attttgattcctattttacaatttcttatatcaattttacaaaagtagttgagtaaaatccttcgattttgatagcgattttacgattctcgattttact 28136073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28745988 - 28746123
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||| |||||||||||||| |   |||||| ||    
T  28745988 attttgattgcgattttacaatttcctatatcgattctacaaaagttcttgagtaaaattcttcgattttgattgcgattttacgagtcccgattttgct 28746087  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     || ||||||||  ||||| ||| |||| |||||||    
T  28746088 attttctttcgacctgaagtaaagtcccaattttga 28746123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 8156043 - 8155922
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttactttt 103  Q
    ||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||  ||||| || ||    
T  8156043 ttgattgcgattttacagtttcttatatcaatgctacaaaagtagttgagtaaaatccttcgatcttagttgcgattttatgattgtccattttgctctt 8155944  T
Q  104 ctctttcgatatgaagcaaaat 125  Q
    ||||| | |  |||||||||||    
T  8155943 ctcttaccacctgaagcaaaat 8155922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 10872621 - 10872497
Alignment:
Q  12 gattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcg 111  Q
    |||||||| |||||||||||||||||| |||| |||||| ||||||||||||| |||||| ||||||||||| |||| |||||||| || ||| |||| |    
T  10872621 gattttacgatttcttatatcgattcttcaaaagtagtttagtaaaatccttcaattttgattgcgattttatgatttttgatttttctcttcccttttg 10872522  T
Q  112 atatgaagcaaaatcccgattttga 136  Q
    |  ||||| ||||||| ||||||||    
T  10872521 acctgaagtaaaatcctgattttga 10872497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17796779 - 17796912
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||| ||||||||| |||||||||  |||||||||||| ||||||||||||||| ||||||||||  |||| ||||||||||| || ||||| ||    
T  17796779 attttgatttcgattttacgatttcttat--cgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttttatttttct 17796876  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||| |||||||  |||| ||||||| | |||||||    
T  17796877 tttccctttcgacctgaatcaaaatctcaattttga 17796912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 19105219 - 19105352
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||| ||||||||| |||||||||  |||||||||||| ||||||||||||||| ||||||||||  |||| ||||||||||| || ||||| ||    
T  19105219 attttgatttcgattttacgatttcttat--cgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttttatttttct 19105316  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||| |||||||  |||| ||||||| | |||||||    
T  19105317 tttccctttcgacctgaatcaaaatctcaattttga 19105352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21963643 - 21963778
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||  | |||||| ||||||||||||||||||| ||| ||| ||||||||||| |||  |||||||||| |||||||| ||||| |||||| ||    
T  21963643 attttgattctggttttacgatttcttatatcgattctataaaagtaattgagtaaaattctttaattttggttgtgattttactattgtcgattttgct 21963742  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||  |||| ||||||| |||||||||    
T  21963743 cttctctttcgacctgaaacaaaatctcgattttga 21963778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21986079 - 21986214
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||  | |||||| ||||||||||||||||||| ||| ||| ||||||||||| |||  |||||||||| |||||||| ||||| |||||| ||    
T  21986079 attttgattctggttttacgatttcttatatcgattctataaaagtaattgagtaaaattctttaattttggttgtgattttactattgtcgattttgct 21986178  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||  |||| ||||||| |||||||||    
T  21986179 cttctctttcgacctgaaacaaaatctcgattttga 21986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24620114 - 24620031
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac 84  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||    
T  24620114 attttgattgcgattttacaattttctatatcgattctacaaaagtctttgagtaaaatccttcgattttgattgcgattttac 24620031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20756234 - 20756319
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |  |||||||||||| ||| |||||| ||||||||||||||    
T  20756234 attttgattgcgattttacaatttcctatatcgattctacaaaaatccttgagtaaaatctttcaattttgattgcgattttacga 20756319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 15515163 - 15515042
Alignment:
Q  13 attttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcga 112  Q
    ||||||||||||||| ||  ||||||| ||| ||||||||||||||| |||||||||| |||  |||||||| ||||| ||||||  |  |||||||| |    
T  15515163 attttacaatttcttctaatgattctataaaagtagttgagtaaaatacttcgattttagttaagattttacaattgtcgattttggtcatctctttcaa 15515064  T
Q  113 tatgaagcaaaatcccgatttt 134  Q
      ||||||||||||||||||||    
T  15515063 cctgaagcaaaatcccgatttt 15515042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8592290 - 8592184
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||| | | |||||| || ||  |||||||  ||||| ||| ||    
T  8592290 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtctcgattttgctatttcctttcgacttgaagtaaagtc 8592191  T
Q  127 ccgattt 133  Q
    |||||||    
T  8592190 ccgattt 8592184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39428115 - 39428183
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattt 69  Q
    ||||||||||||||||||||||||| ||||||||||| |||||  |  |||||||||||||||||||||    
T  39428115 attttgattgcgattttacaatttcctatatcgattccacaaaaatctttgagtaaaatccttcgattt 39428183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 3041464 - 3041570
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccg 129  Q
    |||| ||||||||| ||  ||||||||||||||||||||||| |||||||||||||| |   |||||| ||  ||  ||||||  ||||| |||||||||    
T  3041464 atcgtttctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaaatcccg 3041563  T
Q  130 attttga 136  Q
    |||||||    
T  3041564 attttga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 20766792 - 20766683
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    |||||||||||| |||| |   |||||||||||  |||||||||| |||||||||||||| | | |||||| ||  ||||||||||  ||||| ||| ||    
T  20766792 tatatcgattctccaaaagcccttgagtaaaatttttcgattttgattgcgattttacgagtctcgattttgctactctctttcgagttgaagtaaagtc 20766693  T
Q  127 ccgattttga 136  Q
    ||||||||||    
T  20766692 ccgattttga 20766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 22971054 - 22971106
Alignment:
Q  34 attctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  22971054 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 22971106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29067489 - 29067557
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattt 69  Q
    ||||||||||||||||||||| |||  ||||| ||||||||||  |  |||||||||||||||||||||    
T  29067489 attttgattgcgattttacaacttccaatatcaattctacaaaaatccttgagtaaaatccttcgattt 29067557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 18014251 - 18014288
Alignment:
Q  49 ttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18014251 ttgagtaaaatccttcgattttgattgcgattttacga 18014288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 8560326 - 8560239
Alignment:
Q  49 ttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttga 136  Q
    ||||||||||||||||||||||| ||||||||| |||| | | |||||| ||  || |||| ||  ||||| ||| ||||||||||||    
T  8560326 ttgagtaaaatccttcgattttgattgcgatttcacgagtctcgattttgctactcccttttgacttgaagtaaagtcccgattttga 8560239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27090648 - 27090741
Alignment:
Q  1 attttgattgcgattttacaattt------cttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||| ||||      | |||||||||| ||||||  |  ||||||||||||||||||||||  ||||||| ||||||||    
T  27090648 attttgattgcgattttacgattttgctatcctatatcgattatacaaaattccttgagtaaaatccttcgatttttattgcgatcttacgatt 27090741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 13006089 - 13006176
Alignment:
Q  53 gtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttgaaaatc 141  Q
    |||||||| ||| |||||| |||||||||||||||| |  ||||| || ||| |||||||  | |||| ||||||||||||||| ||||    
T  13006089 gtaaaatcattcaattttgattgcgattttacgattttcaattttgctattccctttcgacctaaagc-aaatcccgattttgacaatc 13006176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22355979 - 22355898
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||| ||||| |||||||||||    |||||||| |||||| ||  |||| ||||||| || ||||||| ||||||||||||||    
T  22355979 attttgtttgcggttttacaattt----tatcgattttacaaaagtccttgaataaaatcttttgattttgattgcgattttacga 22355898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 27055333 - 27055445
Alignment:
Q  29 tatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatccc 128  Q
    ||||||||||||||||||  || ||||||| | ||| |||||  ||||||||||||||||   ||||||||| ||  ||||  |  ||||| ||||| ||    
T  27055333 tatcgattctacaaatgttttttagtaaaacctttcaattttaattgcgattttacgatttgcgattttactatttcctttttacctgaagtaaaattcc 27055432  T
Q  129 gattttgaaaatc 141  Q
    |||||||| ||||    
T  27055433 gattttgacaatc 27055445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 7e-48; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 23898023 - 23898162
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  23898023 attttgattgagattttacaatttcttatatcgattctacaaa-gtagttgagtaaaatccttcgattttggtttcgattttacgattgtcgattttgct 23898121  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttgaaaatc 141  Q
     ||||| |||||  |||||||||||||||||||||| ||||    
T  23898122 cttctcattcgacctgaagcaaaatcccgattttgacaatc 23898162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 30912319 - 30912188
Alignment:
Q  5 tgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttc 104  Q
    ||||||||||| ||  |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||||||| | |||||| || |||    
T  30912319 tgattgcgattctatgatttcttatatcgattttacaaaagtagttgaataaaatccttcaattttggttgagattttacgattatcgattttgctattc 30912220  T
Q  105 tctttcgatatgaagcaaaatcccgattttga 136  Q
    |||||| |  ||||||||||| ||||||||||    
T  30912219 tctttcaacctgaagcaaaattccgattttga 30912188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19748545 - 19748630
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  19748545 attttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 19748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2912178 - 2912046
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| | ||  |||||||||||| | |||||  ||    
T  2912178 attttgattgcgattttacaatttcttataacaattctacaaaagtagttgagtaaaatccttcaatttcgattatgattttacgattatcgatttcgct 2912079  T
Q  101 tttctctttcgatatgaagcaaaatcccgattt 133  Q
     ||||||||| |  |||||||||||||| ||||    
T  2912078 cttctctttcaacctgaagcaaaatcccaattt 2912046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3573817 - 3573681
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||| |||||||| |||||||||||||| |  ||||||| ||    
T  3573817 attttgattgcgattttacaatttcttatatctattctacaagagtagttgagtaaattcctacgattttgattgcgattttacgagtcctgattttgct 3573718  T
Q  101 tttctc-tttcgatatgaagcaaaatcccgattttga 136  Q
     ||| | ||||||  ||||| ||| ||||||||||||    
T  3573717 attcccttttcgacctgaagtaaagtcccgattttga 3573681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 7223731 - 7223862
Alignment:
Q  5 tgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttc 104  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| |||| ||||||||| |   |||||| || |||    
T  7223731 tgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacgagtcccgattttgctattc 7223830  T
Q  105 tctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||  ||||| ||| ||||||||||||    
T  7223831 cctttcgacctgaagtaaagtcccgattttga 7223862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17103407 - 17103542
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||| | ||| |||||||||||||| |  |||||||  |    
T  17103407 attttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcggtattgattgcgattttacgagtcctgattttgtt 17103506  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||| ||| ||||||||||||    
T  17103507 attccctttcgacttgaagtaaagtcccgattttga 17103542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 11327479 - 11327344
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||| |||||||||||||| | | |||||| ||    
T  11327479 attttggttgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgattttgct 11327380  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| ||||| |  ||||| |||  |||||||||||    
T  11327379 attccctttcaacctgaagtaaagccccgattttga 11327344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15528027 - 15527946
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttt 82  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||    
T  15528027 atttcgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttt 15527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22498357 - 22498272
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||| ||||||||||||||    
T  22498357 attttgattgcgattttacaatttcctatatcgattctacaaaagtctttgagtaaaatcgttcaattttgattgcgattttacga 22498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4841746 - 4841659
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||||||||||||||||||| ||||||| ||| |||||| |||||    
T  4841746 attttgattgcgattttacgatttcttatcccgattctacaaaagtagttgagtaaaatcctttgattttgattgtgatttttcgatt 4841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 7918267 - 7918132
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||  ||||||||||| ||||||||||| |||| ||||||||| |  ||||| | ||    
T  7918267 attttgattgcgattttacaatttcctatattgattctacaaaagtccttgagtaaaattcttcgattttgattgcaattttacgagtcctgattctgct 7918168  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||| |||  |||||||||||    
T  7918167 attccctttcgacctgaagtaaagccccgattttga 7918132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17543647 - 17543565
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||  ||||||||||||||||||||||| || ||||||||    
T  17543647 attttgattgcgattttacaatttccaatatcgattctacaaaagtccttgagtaaaatccttcgattttgatttcgatttta 17543565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26053213 - 26053128
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||||||| ||| ||||||||||    
T  26053213 attttgattgcgattttacaatttccaatatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacga 26053128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26073266 - 26073181
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||||||| ||| ||||||||||    
T  26073266 attttgattgcgattttacaatttccaatatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacga 26073181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 33593041 - 33592928
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    |||||| |||||||||| ||||||||||||| || |||||||| | |||| ||||||||||| |  |||||  | ||| |||||||||||||||||||||    
T  33593041 tatatcaattctacaaaagtagttgagtaaa-tcattcgatttcgattgcaattttacgattttcaattttgttattccctttcgatatgaagcaaaatc 33592943  T
Q  127 ccgattttgaaaatc 141  Q
    |||||||||| ||||    
T  33592942 ccgattttgacaatc 33592928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10508934 - 10508886
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagt 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10508934 attttgattgcgattttacaatttcttatatcgattctacaaaagtagt 10508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27233216 - 27233134
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||  |||| ||||||||| || |   |||||||||||||||| |||||| |||||||||||    
T  27233216 attttgattgcgattttacaattttctatagcgattctactaaagaccttgagtaaaatccttcaattttgattgcgatttta 27233134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 20432484 - 20432414
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||||||||||  ||||| |||||||| |||| |||||| |||||||||||||||| | ||||||    
T  20432484 tatatcgattctacaaaactagttaagtaaaattcttcaattttgattgcgattttacgattttcgatttt 20432414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 27614562 - 27614462
Alignment:
Q  12 gattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcg 111  Q
    |||||||||||||| ||||| | ||||||  | ||  ||||||||||||||||||||||| ||| |||||||||| |   ||||||||| ||| ||||||    
T  27614562 gattttacaatttcctatattgtttctactcaagtcattgagtaaaatccttcgattttgattgtgattttacgagtcccgattttactattccctttcg 27614463  T
Q  112 a 112  Q
    |    
T  27614462 a 27614462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 27890624 - 27890683
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||| ||  |||||||||||||||| |||||| || |||||||||||    
T  27890624 tatatcgattctacaaaagtccttgagtaaaatccttcaattttgattacgattttacga 27890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 1179068 - 1179129
Alignment:
Q  33 gattctacaaatgtagttgagtaaaatccttc-gattttggttgcgattttacgattgttga 93  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||| |||| |||| ||||    
T  1179068 gattctacaaaagtagttgagtaaaatccttcagattttgattgcgactttaggatttttga 1179129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 23506099 - 23506186
Alignment:
Q  46 tagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattt 133  Q
    ||||||| |||||||||||||||||  ||| |||||||| ||| | |||||| || |||||||||||  | ||| |||||||| ||||    
T  23506099 tagttgactaaaatccttcgattttaattgtgattttacaattttcgattttgctattctctttcgacttaaagtaaaatccccattt 23506186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17250268 - 17250355
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttc--gattttggttgcgattttacga 86  Q
    ||||||||||||| ||||||||||  |||  ||||||||| || |   ||||||||||||||||   |||||| ||||||||||||||    
T  17250268 attttgattgcgaatttacaattttctatggcgattctactaaagaccttgagtaaaatccttctttattttgattgcgattttacga 17250355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 21354942 - 21355022
Alignment:
Q  56 aaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||||| ||||||||| |||||||||||||| |  ||||||| || ||| ||||| |  ||||| |||||||| |||||||    
T  21354942 aaatccatcgattttgattgcgattttacgagtcctgatttttctattccctttcaacttgaagtaaaatcccaattttga 21355022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 29384229 - 29384094
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  29384229 attttgattgcgattttacgatttcttatattaattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacgattgtcgatttttct 29384130  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     || ||||||||  ||||||||||||||||||||||    
T  29384129 cttttctttcgacctgaagcaaaatcccgattttga 29384094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 17647209 - 17647342
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||    
T  17647209 attttgattgcgattttacaatttcttatatcgattctacaaaactagttgagtaaaatccttcgattttgattgcgattttatgattgtcgattttgct 17647308  T
Q  101 tttctctttcgatatgaagcaaaatcccgatttt 134  Q
      ||||||||||  ||||||||||||||||||||    
T  17647309 catctctttcgacctgaagcaaaatcccgatttt 17647342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 6811032 - 6811166
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||    
T  6811032 attttgattgcgatttt-caatttcttatatctattctacaaaagtagttgattaaaattcttcgattttggttgcgattttacgattgtcgattttgct 6811130  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||||||| |||| |||| | ||||||||||    
T  6811131 cttctctttcgatttgaaacaaagttccgattttga 6811166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 15231835 - 15231958
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||| |||||| || |    
T  15231835 tttgattgcgattttacaattttttatatcgattctacaaaagtagttgagtaaaatcgtacgattttagttgcgattttacgattgtcgattttgctct 15231934  T
Q  103 tctctttcgatatgaagcaaaatc 126  Q
    ||||||||||  ||||||||||||    
T  15231935 tctctttcgacttgaagcaaaatc 15231958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 22910118 - 22909986
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||| |||| |||||||||||||||||||| |||||| || |    
T  22910118 tttgattgcgattttacgatttcttatatcgattctacaaaaatagttgaataaaatccttcaatttcggttgcgattttacgattgtcgatttttctct 22910019  T
Q  103 tctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||||||||| |||| | ||||| ||||||||||    
T  22910018 tctctttcgacatgatgtaaaat-ccgattttga 22909986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 17566313 - 17566448
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttactttt 103  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||| |  ||||| || ||    
T  17566313 ttgattgcgattttacaatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctctt 17566412  T
Q  104 ctctttcgatatgaagcaaaatcccgattttgaaaa 139  Q
    | |||| ||  ||||||||||||| |||||| ||||    
T  17566413 cccttttgacctgaagcaaaatcctgattttaaaaa 17566448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 15761275 - 15761142
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||   |||||||||||||||| |  |||| | |    
T  15761275 attttgattgcgattttactacttcttatatcgattctacaaaagtaattgagtaaaatccttcgatttatattgcgattttacgattctcaatttcatt 15761176  T
Q  101 tttctctttcgatatgaagcaaaatcccgatttt 134  Q
     ||| ||||||   |||||||||||||| |||||    
T  15761175 cttccctttcggcttgaagcaaaatcccaatttt 15761142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 45403242 - 45403376
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||  || |||||||||||||||||||| |||||||||||||| | | |||||| ||    
T  45403242 attttgattgcg-ttttacaatttcctatatcgattctacaaaagtctttaagtaaaatccttcgattttgattgcgattttacgagtctcgattttgct 45403340  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||  ||| ||||||||||||    
T  45403341 attccctttcgacgtgaaataaagtcccgattttga 45403376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 5922265 - 5922395
Alignment:
Q  6 gattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttct 105  Q
    |||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||| |||   |  ||||||| || |||     
T  5922265 gattgcgattttacaatttcctatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattgtacatgttctgattttgctattcc 5922364  T
Q  106 ctttcgatatgaagcaaaatcccgattttga 136  Q
    |||||||  ||||| ||| ||||||||||||    
T  5922365 ctttcgacctgaagtaaagtcccgattttga 5922395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7489200 - 7489115
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||||    
T  7489200 attttgattgcgattttacaattttctatatcgattctacaaaagtccttgagtaaaatcctccgattttgattgcgattttacga 7489115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11879812 - 11879947
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||| ||||||||||||||||  ||||||||||||| ||| ||  ||  ||||||||||||||||||| |||||||||||||| |   |||||||||    
T  11879812 attttgaatgcgattttacaattttctatatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgattttact 11879911  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||| ||  ||||| ||||||||||||||||    
T  11879912 attcccttttgacctgaagtaaaatcccgattttga 11879947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11897228 - 11897363
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||| ||||||||||||||||  ||||||||||||| ||| ||  ||  ||||||||||||||||||| |||||||||||||| |   |||||||||    
T  11897228 attttgaatgcgattttacaattttctatatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgattttact 11897327  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||| ||  ||||| ||||||||||||||||    
T  11897328 attcccttttgacctgaagtaaaatcccgattttga 11897363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23142386 - 23142473
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||| ||||||||   ||||||||||||||||    
T  23142386 attttgattgcgattttacaatttcttatatcgattctacaaaagtttttgactaaaatcattcgatttaaattgcgattttacgatt 23142473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 24414202 - 24414069
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    |||||||  |||||||||||||| |||||||||||||||||  |  ||||||||||||||||||||||| |||||||||||||| | |  ||||| || |    
T  24414202 tttgattaggattttacaatttcctatatcgattctacaaaaattcttgagtaaaatccttcgattttgattgcgattttacgagtctaaattttgctat 24414103  T
Q  103 tctctttcgatatgaagcaaaatcccgattttga 136  Q
    || ||||||| |||||| ||| | || |||||||    
T  24414102 tccctttcgacatgaagtaaagttccaattttga 24414069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31424379 - 31424511
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||| |||||| ||||||| |||||||||||| |||| ||||  ||||||||||||||||||    ||||| |||||||||||||||||| |||||| ||    
T  31424379 atttggattgcaattttactatttcttatatcaattccacaagagtagttgagtaaaatcct---gttttgattgcgattttacgattgtcgattttgct 31424475  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
      ||||||||||  ||||| |||||| |||||||||    
T  31424476 catctctttcgacctgaagtaaaatctcgattttga 31424511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15294881 - 15294963
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||| |||||||||||  ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  15294881 attttgcttgcgattttaagatttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15294963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15475250 - 15475332
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||| |||||||||||  ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  15475250 attttgcttgcgattttaagatttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15475332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32424546 - 32424631
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||  |  ||||||||||||||||||||||  ||||||||||||||    
T  32424546 atttttattgcgattttacaatttcctatctcgattctacaaaactccttgagtaaaatccttcgattttaattgcgattttacga 32424631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 24056483 - 24056352
Alignment:
Q  5 tgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttc 104  Q
    ||||||||||||||  |||| |||||| |||||||||||  |||||||||||||||||||||||||| || | |||||| |||  |  ||||| || |||    
T  24056483 tgattgcgattttaacatttgttatattgattctacaaaactagttgagtaaaatccttcgattttgattaccattttatgatattcaattttgctcttc 24056384  T
Q  105 tctttcgatatgaagcaaaatcccgattttga 136  Q
     |||||||  |||||||||||| || ||||||    
T  24056383 cctttcgacctgaagcaaaatctcggttttga 24056352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 2040360 - 2040464
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccg 129  Q
    |||||||||||||| ||   |||||||||||||||||||||| |||||||||||||| |   |||||| ||  ||||||||||  ||||| ||| |||||    
T  2040360 atcgattctacaaaagtccatgagtaaaatccttcgattttgattgcgattttacgagttccgattttgctactctctttcgacttgaagtaaagtcccg 2040459  T
Q  130 atttt 134  Q
    |||||    
T  2040460 atttt 2040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3094159 - 3094052
Alignment:
Q  1 attttgattgcgatttt-acaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttac 99  Q
    ||||||||||||||||| ||||||||||||||     ||||||| ||| |||||||||||||||| ||||| |||||  |||||||||||| |||||| |    
T  3094159 attttgattgcgatttttacaatttcttatatgc---ctacaaaagtaattgagtaaaatccttcaatttttgttgcagttttacgattgtcgattttgc 3094063  T
Q  100 ttttctctttc 110  Q
    | | |||||||    
T  3094062 tctactctttc 3094052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8582255 - 8582314
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatc 60  Q
    ||||||||||  ||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  8582255 attttgattgtaattttacgatttcttatatcaattctacaaaagtagttgagtaaaatc 8582314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19704374 - 19704289
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||| |||||||  |||||  |||||||||||||||  ||  ||||||||| ||||| ||||||| ||||||||||||||    
T  19704374 attttgattgtgattttaagatttcaaatatcgattctacaacagtccttgagtaaattcctttgattttgattgcgattttacga 19704289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 27836181 - 27836131
Alignment:
Q  36 tctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  27836181 tctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 27836131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 16752283 - 16752320
Alignment:
Q  49 ttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16752283 ttgagtaaaatccttcgattttgtttgcgattttacga 16752320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 40541714 - 40541652
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||||||| | ||  |||| ||||||| ||| |||||| ||||||||||||||    
T  40541714 tcttatatcgattctacagaagtccttgaataaaatctttcaattttgattgcgattttacga 40541652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 7262006 - 7262059
Alignment:
Q  33 gattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||| ||  |||||||||||||||  |||||| ||||||||||||||    
T  7262006 gattctacaaaagtccttgagtaaaatcctttaattttgattgcgattttacga 7262059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 15294779 - 15294808
Alignment:
Q  1 attttgattgcgattttacaatttcttata 30  Q
    ||||||||||||||||||||||||||||||    
T  15294779 attttgattgcgattttacaatttcttata 15294808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 15475148 - 15475177
Alignment:
Q  1 attttgattgcgattttacaatttcttata 30  Q
    ||||||||||||||||||||||||||||||    
T  15475148 attttgattgcgattttacaatttcttata 15475177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 6292273 - 6292201
Alignment:
Q  54 taaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    |||||||| || |||||  ||||||||| |||||||| |||||| ||  ||||||||||| | ||||||||||    
T  6292273 taaaatccatcaattttaattgcgatttaacgattgtcgattttgctgatctctttcgatctaaagcaaaatc 6292201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15588771 - 15588647
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||| |||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||    
T  15588771 attttgattgcgattttataatttcttatatcgatcctacgaa-gtaattgagtaaaatccttcgattttggttgcgattttatgattgtcgatttttct 15588673  T
Q  101 tttctctttcgatatgaagcaaaatc 126  Q
    ||||||||||||  ||||||||||||    
T  15588672 tttctctttcgacctgaagcaaaatc 15588647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 19245827 - 19245936
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||| |||||||| || ||| ||||| |  ||||||||||||    
T  19245827 tatatcgattctacaaaagtagttaagtaaaatccttagattttgattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatc 19245926  T
Q  127 ccgattttga 136  Q
    ||||||||||    
T  19245927 ccgattttga 19245936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19262233 - 19262148
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||| ||||||||||||||    
T  19262233 attttgattgcgattttacaatttcttatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacga 19262148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35565874 - 35565740
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgag---taaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||| |||||||  ||||||||||||||||||||||| |||||||||   ||||||||||||||||| ||||||||||||| ||| | ||||||    
T  35565874 attttgattgtgattttatgatttcttatatcgattctacaaaagtagttgagtaataaaatccttcgattttagttgcgattttacaattatcgatttt 35565775  T
Q  98 acttttctctttcgatatgaagcaaaatcccgatt 132  Q
     || ||||| |||||  ||| ||||||||||||||    
T  35565774 gctcttctccttcgacctgaggcaaaatcccgatt 35565740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16766997 - 16767084
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||| ||||    
T  16766997 attttgattgcgattttacgatttcttatatcgattctataaaagtagttgagtaaaatccttcaattttgattgcgattttatgatt 16767084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 8428440 - 8428569
Alignment:
Q  7 attgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctc 106  Q
    ||||||||||||| |||| | |||| |||||||||||  |||||||| ||||||||||||||||| |||||||||||  ||| |||||||| || ||| |    
T  8428440 attgcgattttacgatttttgatattgattctacaaaaatagttgagcaaaatccttcgattttgattgcgattttagaatttttgatttttctattccc 8428539  T
Q  107 tttcgatatgaagcaaaatcccgattttga 136  Q
    ||||||  | ||||||||||||||||||||    
T  8428540 tttcgacctaaagcaaaatcccgattttga 8428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 20063935 - 20064070
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||| |||||||||||||| | | |||||| ||    
T  20063935 attttggttgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgattttgct 20064034  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| ||||| |  ||||| |||  |||||||||||    
T  20064035 attccctttcaacctgaagtaaagccccgattttga 20064070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1404995 - 1405077
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  1404995 attttgattgcaattttacaatttcctatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 1405077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13502590 - 13502481
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||| ||||||||||| |||||||||||  ||||||| ||| ||||||| |||||| || ||||||||||||| | |||||||||    
T  13502590 attttgattgcgattttacgatttcttatatagattctacaaaaatagttgactaatatccttcaattttgattacgattttacgattttcgattttact 13502491  T
Q  101 tttctctttc 110  Q
     ||| |||||    
T  13502490 cttccctttc 13502481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25539062 - 25538977
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||  |||||| ||||||||||||||    
T  25539062 attttgattgcaattttacaattttttatatcgattctacaaaagtagttcagtaaaatcctttaattttgattgcgattttacga 25538977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30433027 - 30433109
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||  |||||||||||| |||||||||| |||||||||||    
T  30433027 attttgattgcgattttacaatttcctatatcgattctataaaagtccttgagtaaaatcattcgattttgattgcgatttta 30433109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31237893 - 31237753
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||| ||||||||||||  |||||||||| |||||| ||  ||||||||||||||||||| ||| |||||||||||||| |   |||||||||    
T  31237893 attttgattgcaattttacaattttctatatcgattttacaaaagtccttgagtaaaatccttcgatattgattgcgattttacgagtcccgattttact 31237794  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttgaaaatc 141  Q
     ||| |||| ||  ||||| ||| ||| |||||||| ||||    
T  31237793 attcccttttgaactgaagtaaagtcctgattttgacaatc 31237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 23863352 - 23863283
Alignment:
Q  55 aaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaa 124  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||    
T  23863352 aaaatccatcgattttggttgcgattttacgaatgttgattttgcttttctctttcgacttgaagcaaaa 23863283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1690645 - 1690566
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatt 80  Q
    ||||||||||||||||||| | ||||||||||||||  ||||| |||||| |||||| ||||||| ||||||||||||||    
T  1690645 attttgattgcgattttacgaattcttatatcgatttaacaaaagtagttcagtaaattccttcgcttttggttgcgatt 1690566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27407003 - 27407090
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||  ||||||||||| |||| | |||| ||||||||||||||| ||| ||||||| ||||||| ||||||||    
T  27407003 attttgattgcgattttatgatttcttatattgattatccaaaagtagttgagtaaaattcttggattttgattgcgatattacgatt 27407090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 31062311 - 31062406
Alignment:
Q  39 acaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgatttt 134  Q
    ||||| |||||||||||||||| |||||||||| |||| || |||| ||| || |||||||| ||| ||||||| ||||||||||||||| |||||    
T  31062311 acaaaagtagttgagtaaaatctttcgattttgattgcaatgttacaattttttattttactcttccctttcgacatgaagcaaaatcccaatttt 31062406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 974576 - 974635
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  974576 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 974635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 20034110 - 20034004
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccg 129  Q
    |||||||||||||| ||  |||||||||||||||| |||||| |||||||||||||| | | |||||| ||  || |||||||  ||||| ||| |||||    
T  20034110 atcgattctacaaaagtccttgagtaaaatccttcaattttgattgcgattttacgagtctcgattttgctactccctttcgacttgaagtaaagtcccg 20034011  T
Q  130 attttga 136  Q
    |||||||    
T  20034010 attttga 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 27523984 - 27523928
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  27523984 atcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 27523928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 29661093 - 29661168
Alignment:
Q  13 attttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||| ||||||||||||||| ||||||| |||||| | ||||| |||||||||||  ||||| ||||||||||    
T  29661093 attttacgatttcttatatcgatactacaaaagtagtttaataaaaaccttcgattttaattgcggttttacgatt 29661168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 21869212 - 21869103
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||  ||||||||||| || |   |||||| || ||| |||||||  ||||| ||| ||    
T  21869212 tatatcgattctacaaaagtcattgaataaaatccttcgattttaattgcgattttaagagtcccgatttttctattccctttcgacttgaagtaaagtc 21869113  T
Q  127 ccgattttga 136  Q
    ||||||||||    
T  21869112 ccgattttga 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36430060 - 36430145
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||| ||||||   ||| || |||||||||||||||  |  |||||||| |||||||||||||| ||||||||||||||    
T  36430060 attttgattgcaattttaattttttttttatcgattctacaaaaattattgagtaatatccttcgattttgattgcgattttacga 36430145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 7302023 - 7302079
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||| ||  ||||||||||||||||||||||| |||| |||||||||    
T  7302023 atcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacga 7302079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 15627991 - 15628052
Alignment:
Q  36 tctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||| |||||||||||||| |||||||||||| || | ||||||| ||| | ||||||    
T  15627991 tctacaaaagtagttgagtaaaaaccttcgattttgatttccattttacaattttcgatttt 15628052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 19492132 - 19492205
Alignment:
Q  53 gtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    ||||||||| ||||||||| || || |||||||||| || |||||  | |||||||||||  ||||||||||||    
T  19492132 gtaaaatccatcgattttgattacggttttacgatttttaattttgttgttctctttcgacctgaagcaaaatc 19492205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 34578130 - 34578183
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||||||| ||   ||||||||||||||| |||||| |||||||||||    
T  34578130 atcgattctacaaaagtccatgagtaaaatccttcaattttgattgcgatttta 34578183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 120 - 1
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  120 attttgattgagattttacaatttcttatatcgattctacaaa-gtagttgagtaaaatccttcgattttggtttcgattttacgattgtcgattttgct 22  T
Q  101 tttctctttcgatatgaagca 121  Q
     ||||| |||||  |||||||    
T  21 cttctcattcgacctgaagca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6346872 - 6346737
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| | |||||| ||    
T  6346872 attttgattgcgattttacaatttcttatattcattctacaaaagtagttgagtaaaatccttcgattttgattgtgattttacgattttcgattttgct 6346773  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||||||| | ||||||||||    
T  6346772 cttccctttcgacctgaagcaaatttccgattttga 6346737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10143112 - 10143208
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  10143112 attttgattgcgattttacaatctcttatatcgattctacaaaattagttgaataaaatccttcgattttgattgcgattttacgattgttaatttt 10143208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 37240450 - 37240574
Alignment:
Q  1 attttgattgcgattttacaatttctt-atatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttac 99  Q
    |||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||  |    
T  37240450 attttgattgtgattttacgatttctttatatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacgattgtcgatttagc 37240549  T
Q  100 ttttctctttcgatatgaagcaaaa 124  Q
    | ||||||||||   ||||||||||    
T  37240550 tcttctctttcgtcctgaagcaaaa 37240574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 5361880 - 5361771
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttt 102  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||  ||||| || |    
T  5361880 tttgattgcgattttacgatttcatatatcgattctacaaaagtagttgagtaaaacccttcgattttgtttgcaattttacgattgtctattttgctct 5361781  T
Q  103 tctctttcga 112  Q
    ||||||||||    
T  5361780 tctctttcga 5361771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8011053 - 8010968
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||    
T  8011053 attttgattgcgattttacaatttcttatatcgattctataaaaatagttgagtaaaatccttcgattttgattgcgattttacga 8010968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9911328 - 9911193
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||| ||||  |||||||||||||| |   |||||||||    
T  9911328 attttgattgcgattttacaatttcttatatcgattctacaaaagttctcgagtaaaatccttcgttttttattgcgattttacgagtcccgattttact 9911229  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||||||||| ||| |||  |||||||    
T  9911228 attccctttcgatatgaagtaaagtcctaattttga 9911193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 17466291 - 17466415
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||| |||| ||||||||||||| |||||| ||    
T  17466291 attttgattgcaattttacaatttcttatatcgattccacaaaagtagttgagtataatctttcaattttgtttgcaattttacgattgtcgattttgct 17466390  T
Q  101 tttctctttcgatatgaagcaaaat 125  Q
       |||||||||  |||||||||||    
T  17466391 cagctctttcgacttgaagcaaaat 17466415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 8889438 - 8889563
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||         |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||  ||||| |     
T  8889438 attttgattgcgattttacaattt---------attctacaaaagtagttgagtaagatccttcgattttggttgcgattttacaattgtcaattttgc- 8889527  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
    | ||||||||||  ||||||||||||||||||||||    
T  8889528 tctctctttcgacctgaagcaaaatcccgattttga 8889563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9770324 - 9770459
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |   ||||||||||||||||||||||| |||||||||||||| |   |||||| ||    
T  9770324 attttgattgcgattttacaatttgctatatcgattctacaaaagaccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgct 9770423  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  | ||| ||| ||||||||||||    
T  9770424 attccctttcgacctaaagtaaagtcccgattttga 9770459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 10394824 - 10394918
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    ||||||||  ||||||| ||||| |||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  10394824 tttgattgtaattttacgatttcctataccgattctacaaaagtagttgagtaaagtccttcgattttgattgcgattttacgatttttgatttt 10394918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 5943166 - 5943065
Alignment:
Q  11 cgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttc 110  Q
    ||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||||  |||||||||||||||| |||||||| || ||| |||||    
T  5943166 cgattttacgatttcttaaaccgattctacaaaagtagttgagtaaaatccttcaattttacttgcgattttacgatttttgattttgctcttccctttc 5943067  T
Q  111 ga 112  Q
    ||    
T  5943066 ga 5943065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24719787 - 24719874
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||| || || ||||||| |||||    
T  24719787 attttgattgcgattttacgatttcttatatcgattctacaaaagtaatcgagtaaaatccttcgattgtgatttcgatttttcgatt 24719874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 7045154 - 7045291
Alignment:
Q  1 attttgattgcgattttacaatttcttatatc--gattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttta 98  Q
    ||||||||||  ||||||| ||||||||||||  ||||||  ||| | ||||||||||||||||||||||||| ||||||||||| |||| ||||||||     
T  7045154 attttgattgatattttacgatttcttatatctcgattcttgaaaagcagttgagtaaaatccttcgattttgattgcgattttatgatttttgattttg 7045253  T
Q  99 cttttctctttcgatatgaagcaaaatcccgattttga 136  Q
    || ||| |||||||  ||||| ||||| || |||||||    
T  7045254 ctcttccctttcgacctgaagtaaaattcctattttga 7045291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5375877 - 5375962
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||| |||||||||||||| ||||| ||||||||| | ||  ||||||||||||||||||||||| ||||||||||||||    
T  5375877 attttgattgtgattttacaatttcctatatagattctacagaagtccttgagtaaaatccttcgattttgattgcgattttacga 5375962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23064878 - 23064793
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||  |||| ||||||||||| |||||| ||||||||||||||    
T  23064878 attttgattgcaattttacaatttcctatatcgattctacaaaagtccttgaataaaatccttcaattttgattgcgattttacga 23064793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36121035 - 36121120
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||  |||||||||||| |||||||||| || |||||||||||    
T  36121035 attttgattgcgattttacaatttcctatatcgatactacaaaagtccttgagtaaaatctttcgattttgattccgattttacga 36121120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 18459528 - 18459413
Alignment:
Q  21 atttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagc 120  Q
    |||||||||||| ||||||||||  ||||| ||| |||||||||||||||  |||||||||||||||||| |||||| || ||  ||||| |  ||||||    
T  18459528 atttcttatatcaattctacaaaattagttaagtcaaatccttcgattttaattgcgattttacgattgtcgattttgctctttcctttcaacctgaagc 18459429  T
Q  121 aaaatcccgattttga 136  Q
    |||||| |||||||||    
T  18459428 aaaatctcgattttga 18459413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7044975 - 7045057
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||  ||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||| |||||||||||    
T  7044975 attttgattgatattttacgatttcttatatcgattattcaaaagtagttgagtaaaatcattcgattttgattgcgatttta 7045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 7452731 - 7452852
Alignment:
Q  14 ttttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgat 113  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |  | ||| || ||| |||||||     
T  7452731 ttttacgatttcgtatattgattctacaaaagtagttgagtaaa-tccttcgattttgattgcgattttacgattttcaacttttctcttccctttcgac 7452829  T
Q  114 atgaagcaaaatcccgattttga 136  Q
     |||||||||||||  |||||||    
T  7452830 ctgaagcaaaatcctaattttga 7452852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 55476223 - 55476335
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaa 123  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||| |   ||||||| |  || |||||||  ||||| |||    
T  55476223 tcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtaccgattttattactccctttcgacttgaagtaaa 55476322  T
Q  124 atcccgattttga 136  Q
     ||||||||||||    
T  55476323 gtcccgattttga 55476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 8931441 - 8931516
Alignment:
Q  8 ttgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||| |||||||||||| |||| ||  || ||||||||||||||||||||||||||||||||| |||||    
T  8931441 ttgcgattttataatttcttatattgattttatcaaagtagttgagtaaaatccttcgattttggttgcggtttta 8931516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 4157269 - 4157377
Alignment:
Q  31 tcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac---gattgttgattttacttttctctttcgatatgaagcaaaatcc 127  Q
    ||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||   |||| | |||||| || ||| |||||||  | |||||||||||    
T  4157269 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157368  T
Q  128 cgattttga 136  Q
    |||||||||    
T  4157369 cgattttga 4157377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 4157556 - 4157664
Alignment:
Q  31 tcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac---gattgttgattttacttttctctttcgatatgaagcaaaatcc 127  Q
    ||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||   |||| | |||||| || ||| |||||||  | |||||||||||    
T  4157556 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157655  T
Q  128 cgattttga 136  Q
    |||||||||    
T  4157656 cgattttga 4157664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 8743656 - 8743547
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatc 126  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| || |||| |||| ||| |||||||| ||  |||| |||||   ||||| |||||    
T  8743656 tatatcgattatacaaatgtagttgagtaaaatctttcgattttgattacgatgttactatttttgattttgctagtctcattcgaccagaagctaaatc 8743557  T
Q  127 ccgattttga 136  Q
    | ||||||||    
T  8743556 cggattttga 8743547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9149640 - 9149556
Alignment:
Q  1 attttgattgcgatttt-acaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac 84  Q
    |||||||||||| |||| || |||||||||||||||||||| || |||||||||||||||||||| |||||| |||  |||||||    
T  9149640 attttgattgcgttttttacgatttcttatatcgattctacgaaagtagttgagtaaaatccttcaattttgattggaattttac 9149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13551589 - 13551493
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||| ||||||| |||||  || |||||||||| ||| ||  | ||||||||||||||||||||  |||||||||||||| | ||||||||    
T  13551589 attttgattgtgattttaaaattttctaaatcgattctataaaagtcctcgagtaaaatccttcgattttaattgcgattttacgagtcttgatttt 13551493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 5884171 - 5884129
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattt 69  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  5884171 tatattgattctacaaaaatagttgagtaaaatccttcgattt 5884129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 8367462 - 8367499
Alignment:
Q  49 ttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  8367462 ttgagtaaaatccttcgattttgattgcaattttacga 8367499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 4157050 - 4157086
Alignment:
Q  52 agtaaaatccttcgattttggttgcgattttacgatt 88  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  4157050 agtaaaatccatcgattttgattgcgattttacgatt 4157086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 61231 - 61097
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||| || ||||||||| ||||| ||||||||||||||||| |||||| |||||||| ||||||||||| ||| |||||||||||| |  ||||||||    
T  61231 attttggttacgattttacgatttcatatatcgattctacaaaagtagttaagtaaaattcttcgattttgattgtgattttacgattttaaattttact 61132  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttg 135  Q
    ||||||||| ||  |||||||||||||||||||||    
T  61131 tttctcttttgacctgaagcaaaatcccgattttg 61097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48579 - 48497
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||| |||||||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||    
T  48579 attttgatcgcgattttacgacttcttttatcgattctacaaaagtagttaagtaaaatccttcgattttgattgagatttta 48497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 8876 - 8740
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||| |||| | |||||| ||    
T  8876 attttgattgcgattttacaagttcttatatctattctacaaaagtagttgagtaaaatccttcgattttgattacgattttatgattttcgattttgct 8777  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttgaa 137  Q
     | |  |||| |  | |||||||||||||||||||||    
T  8776 ctaccttttcaacctaaagcaaaatcccgattttgaa 8740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 885 - 1020
Alignment:
Q  4 ttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttactttt 103  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||| |  ||||| || ||    
T  885 ttgattgcgattttacaatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctctt 984  T
Q  104 ctctttcgatatgaagcaaaatcccgattttgaaaa 139  Q
    | |||| ||  ||||||||||||| |||||| ||||    
T  985 cccttttgacctgaagcaaaatcctgattttaaaaa 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 43005776 - 43005641
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| ||| |||||| |||||||||||| ||| | || ||| ||    
T  43005776 attttaattgcgattttacgatttcctatatcgattctacaaaagaagttgagtaaaatctttcaattttgattgcgattttacaattttcgaattttct 43005677  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||  |||||||| | ||||||||||||||||||||    
T  43005676 atttcctttcgatctaaagcaaaatcccgattttga 43005641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43235080 - 43235162
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  43235080 attttgattgcgattttacaattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 43235162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21059074 - 21058978
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagt-aaaatccttcgattttggttgcgattttacgattgttgattt 96  Q
    |||||||||||||||||| ||||||||||||  |||||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||| |||||    
T  21059074 attttgattgcgattttataatttcttatataaattctacaaaagtagttaagtaaaaatctttcgattttggttgcgattttacgattgtcgattt 21058978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38158181 - 38158101
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattt 81  Q
    |||||||||| ||||||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  38158181 attttgattgtgattttacaatttcttacatagattctacaaaaatagttgagtaaaatccttcgattttggttgcgattt 38158101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41688583 - 41688501
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||    
T  41688583 attttgattgcgattttacaattttctatatcgattctacaaaagtccttaagtaaaatccttcgattttggttgcgatttta 41688501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18843927 - 18844062
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||  ||||||||||| || |||||||| |||||||||||||| |   |||||| ||    
T  18843927 attttgattgcgattttacaatttcctatatggattctacaaaagtccttgagtaaaatactccgattttgattgcgattttacgagtcccgattttgct 18844026  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||| ||| | ||||||||||    
T  18844027 attccctttcgacctgaagtaaagttccgattttga 18844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 27340104 - 27339969
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||  |||||||||||| |||||||||| ||   |||||||||||||||||||||| ||||||||| |||||| | |||||| ||    
T  27340104 attttgattgcgattttaatatttcttatatcaattctacaaaagtccgtgagtaaaatccttcgattttgattgcgatttcacgattttcgattttgct 27340005  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| ||||| |  ||||| ||| | ||||||||||    
T  27340004 attccctttcaacttgaagtaaagttccgattttga 27339969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23172345 - 23172265
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattt 81  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||| || ||||||    
T  23172345 attttgattgcgattttacaatttcctatatcgattctacaaaagtctttgagtaaaattcttcgattttgattacgattt 23172265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 24648241 - 24648332
Alignment:
Q  21 atttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcga 112  Q
    |||| |||||| ||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||| | ||||||||| ||| |||||||    
T  24648241 attttttatattgattctacaaaagtagttgagtaaaatcctttgattttgattacgattttacgattttcgattttactcttccctttcga 24648332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 13341588 - 13341479
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttga-ttttacttttctctttcgatatgaagcaaaat 125  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||| | |||||||||||||||| || | |||| || ||| |||||||| |||||||||||    
T  13341588 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctattccctttcgatttgaagcaaaat 13341490  T
Q  126 cccgattttga 136  Q
    |||||||||||    
T  13341489 cccgattttga 13341479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19579155 - 19579237
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||  |||| |||||||||||| ||  |||||| |||||||||||||||| |||||||||||    
T  19579155 attttgattgcgattttacaattttctataacgattctacaaaagtccttgagtgaaatccttcgattttgattgcgatttta 19579237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20321155 - 20321237
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||  || ||||||||||||| |||||| |||||||||||    
T  20321155 attttgattgcgattttacaatttcctatatagattctacaaaagtccttcagtaaaatccttcaattttgattgcgatttta 20321237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 19042343 - 19042260
Alignment:
Q  3 tttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||  || |||||||| ||||||||||  ||| ||||||||||    
T  19042343 tttgattgcgattttacaatttcctatatcgattctacaaaagtccttaagtaaaattcttcgattttaattgtgattttacga 19042260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18051450 - 18051315
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||  || | |||||| ||| ||||||| |||||||| ||| | |   |||||| ||    
T  18051450 attttgcttgcgattttacaatttcctatatcgattctacaaaagtccttcaataaaattctttgattttgattgcgattctacaagtcccgatttttct 18051351  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  | ||| ||||||||||||||||    
T  18051350 attccctttcgacctaaagtaaaatcccgattttga 18051315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 26021537 - 26021612
Alignment:
Q  7 attgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttt 82  Q
    |||| |||||||| |||||||||||||||  |||| | |||||||||||||||||| |||||||| ||| ||||||    
T  26021537 attgtgattttacgatttcttatatcgatgttacacaagtagttgagtaaaatcctacgattttgattgtgatttt 26021612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 41427657 - 41427716
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||| ||  | ||||||||||||||||||||| ||||||||||||||    
T  41427657 tatatcgattctacaaaagtcctcgagtaaaatccttcgattttgattgcgattttacga 41427716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 19377838 - 19377924
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttc 110  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||||||| | |||||| || ||| |||||    
T  19377838 tcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtaaatttacgattctcgattttgctattccctttc 19377924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 15051981 - 15051929
Alignment:
Q  34 attctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||    
T  15051981 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 15051929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 19979853 - 19979915
Alignment:
Q  74 tgcgattttacgattgttgattttacttttctctttcgatatgaagcaaaatcccgattttga 136  Q
    |||| |||||||||||| |||||| || |||||||| ||  ||||||||||||||||||||||    
T  19979853 tgcgtttttacgattgtcgattttgctcttctcttttgacctgaagcaaaatcccgattttga 19979915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 30799635 - 30799677
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattt 69  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  30799635 tatatcgattctacaaaagtagttgtgtaaaatccttcgattt 30799677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 17624851 - 17624900
Alignment:
Q  39 acaaatgtagttgagtaaaatccttcgattttggttgcgattttacgatt 88  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  17624851 acaaaagtagttgagtaaaatcttttgattttgattgcgattttacgatt 17624900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 15446447 - 15446506
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||| | ||| |||||||    
T  15446447 tcttatatcgattctacaaaagtagtcgactaaaatccttcggtttcgattgtgatttta 15446506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 22645596 - 22645559
Alignment:
Q  49 ttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  22645596 ttgagtaaaatccttcgattttgattgcaattttacga 22645559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 22645739 - 22645710
Alignment:
Q  1 attttgattgcgattttacaatttcttata 30  Q
    ||||||||||||||||||||||||||||||    
T  22645739 attttgattgcgattttacaatttcttata 22645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 22984692 - 22984643
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgc 76  Q
    |||||||||||||||||  |  ||||||||||||||||||||||| ||||    
T  22984692 tatatcgattctacaaaattccttgagtaaaatccttcgattttgattgc 22984643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 30804172 - 30804213
Alignment:
Q  27 tatatcgattctacaaatgtagttgagtaaaatccttcgatt 68  Q
    ||||||||||||||||| |||||| ||||||||| |||||||    
T  30804172 tatatcgattctacaaaagtagtttagtaaaatcattcgatt 30804213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 56342 - 56260
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgatttta 83  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  56342 attttgattgcgattttacaatttcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttta 56260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 8653 - 8788
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttact 100  Q
    ||||||||||||||||||||||||| |||||||||||||| ||  || |||||||||||||||| |||||| |||||||||||||| |   ||||||  |    
T  8653 attttgattgcgattttacaatttcctatatcgattctacgaaaatacttgagtaaaatccttcaattttgattgcgattttacgagttccgattttgtt 8752  T
Q  101 tttctctttcgatatgaagcaaaatcccgattttga 136  Q
     ||| |||||||  ||||| ||| ||||||||||||    
T  8753 attccctttcgacctgaagtaaagtcccgattttga 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 93622 - 93539
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac 84  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||| || |||||||||    
T  93622 attttgattgcgattttacgatttattatatcgattctacaaaagtagttgaataaaatccttcgattttgattacgattttac 93539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 145823 - 145935
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgattttacttttctctttcgatatgaagcaaa 123  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||| |||| ||||||||||| | ||||| ||| || ||||||||  |||||||||    
T  145823 tcttatatcgattctacaaaagtaagtgagtaaaatccttcgattttgattgctattttacgattttcgatttaactattttctttcgacctgaagcaaa 145922  T
Q  124 atcccgattttga 136  Q
    ||| | |||||||    
T  145923 atctcaattttga 145935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7372 - 7289
Alignment:
Q  1 attttgattgcgattttacaatttcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttac 84  Q
    ||||||||||||||| ||||||||| |||||| |||| ||||| ||| ||||||||||||||||||||||| || |||||||||    
T  7372 attttgattgcgattatacaatttcctatatctattcaacaaaagtacttgagtaaaatccttcgattttgattacgattttac 7289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 33173 - 33246
Alignment:
Q  24 tcttatatcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacgattgttgatttt 97  Q
    |||||||||||||||||||| |||  |||||||||| ||||||||||| |||||||||||| ||| | ||||||    
T  33173 tcttatatcgattctacaaaagtaagtgagtaaaattcttcgattttgattgcgattttacaattttcgatttt 33246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 14814 - 14758
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||| ||  |||| |||||||||||||||||| ||||||||||||||    
T  14814 atcgattctacaaaagtctttgaataaaatccttcgattttgattgcgattttacga 14758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 133003 - 132947
Alignment:
Q  30 atcgattctacaaatgtagttgagtaaaatccttcgattttggttgcgattttacga 86  Q
    |||||||||||||| ||  ||||| ||||||||||||||||| ||||||||||||||    
T  133003 atcgattctacaaaagtccttgaggaaaatccttcgattttgattgcgattttacga 132947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University