View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_high_11 (Length: 432)
Name: NF19105_high_11
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 44992704 - 44992295
Alignment:
| Q |
17 |
atataatagatttaatttgcaaacattgacattctaaaacttctttaaaaccatactaactacnnnnnnnnnnccttatgcatgagactagagggagtaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44992704 |
atataatagatttaatttgcaaacattgacattataaaacttctttaaaaccatactaactacttttttttt-ccttatgcatgagactagagggagtaa |
44992606 |
T |
|
| Q |
117 |
aacctataattgcataaaaagagtatagcaataaaccaccatgaacatggtatgaacttttcaaactagaggcatccgaatcatcgtcacatttgtttag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44992605 |
aacctataattgcataaaaagagtatagcaataaaccaccatgaacatggtatgaacttttcaaactagaggcatccgaatcatcgtcacatttgtttag |
44992506 |
T |
|
| Q |
217 |
accccactttgacattttcacaatgtcaatgaaaaaggaaaatgaatttggcatttttaaaggaccaaagaaaacctctcaagttcctccaatccacgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44992505 |
accccactttgacattttcacaatgtcaatgaaaaaggcaaatgaatttggcatttttaaaggaccaaagaaaacctctcaagttcctccaatccacgac |
44992406 |
T |
|
| Q |
317 |
agcctccaacctccacatgattccactttgcacattttctttctactataaaaatcattatttacccaactcatgcactcaaccatccttcttgcttcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44992405 |
agcctccaacctccacatgattccactttgcacattttctttctactataaaaatcattatttacccaactcatgcactcaaccatccttcttgcttcat |
44992306 |
T |
|
| Q |
417 |
cctcttcattt |
427 |
Q |
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||||||||||| |
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| T |
44992305 |
cctcttcattt |
44992295 |
T |
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