View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_high_33 (Length: 207)
Name: NF19105_high_33
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 36151633 - 36151551
Alignment:
| Q |
111 |
atgaagtgtcatgattctataaaatttgcattccttt-----ctacattgttttaaaacaaaatatcaatatataaaattgaa |
188 |
Q |
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| T |
36151633 |
atgaagtgtcatgattctataaaatttgcattcctttaatttctacattgttttaaaacaaaatatcaatatataaaattgaa |
36151551 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 36156804 - 36156726
Alignment:
| Q |
111 |
atgaagtgtcatgattctataaaatttgcattcctttctacattg-ttttaaaacaaaatatcaatatataaaattgaa |
188 |
Q |
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| T |
36156804 |
atgaagtatcatgattctataaaattcacattgctttctatattgtttttaacccaaaatatcaatatataaaattgaa |
36156726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 36151741 - 36151701
Alignment:
| Q |
3 |
aggggcctaaatcttttaccatttggaccatgtcattattg |
43 |
Q |
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| T |
36151741 |
aggggcctaagtctcttaccatttggaccatgccattattg |
36151701 |
T |
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