View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19105_high_6 (Length: 520)

Name: NF19105_high_6
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19105_high_6
NF19105_high_6
[»] chr1 (1 HSPs)
chr1 (31-510)||(36951434-36951912)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 31 - 510
Target Start/End: Complemental strand, 36951912 - 36951434
Alignment:
Q  31 ttcaattgtttgtgatttgagattgaaatgtctggttcattagctgcaggtagaggaggaaatggaagtagtagtgatgtaccagtaccttatcctcaac 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  36951912 ttcagttgtttgtgatttgagattgaaatgtctggttcattagctgcaggtagaggaggaaatggaagtagcagtgatgtaccagtacctgatcctcaac 36951813  T
Q  131 ctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctttcactgggtaacaannnnnnnnattagaattaga 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  36951812 ctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctttcactgggtaacaa-tttttttattagaattaga 36951714  T
Q  231 gcacgtttgtcacaactttcttnnnnnnnnttataatttgaaagaannnnnnnncttctaaaaatgataaaaagttttgagtacctgttctagctagaaa 330  Q
    ||||||||||||||||||||||        ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  36951713 gcacgtttgtcacaactttcttaaaaaaaattataatttgaaagaattttttttcttctaaaaatgataaaaagttttgagtacctgttctagctagaaa 36951614  T
Q  331 attatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttccttttggtaagnnnnnnnnngttgtttattgcatact 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| ||||||    
T  36951613 attatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttccttttggtaagtttttttatgttgtttattacatact 36951514  T
Q  431 agaattagcttaatcatgttaattatttattgattgtagagtttattcaacatggtagatgtatgttgttgtcacctttg 510  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36951513 agaattagcttaatcatgttatttatttattgattgtatagtttattcaacatggtagatgtatgttgttgtcacctttg 36951434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University