View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_1 (Length: 699)
Name: NF19105_low_1
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 24480843 - 24481335
Alignment:
| Q |
17 |
aagaaattcatgaaaggcatgtttatagaaagaataattttagttcaaaatgaaagtannnnnnnncaaaatttcatgaacatcatcaagattagcaaca |
116 |
Q |
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| T |
24480843 |
aagaaattcatgaaaggcatgtttatagaaagaataattttagttcaaaatgaaagtattttttttcaaaatttcatgaacatcatcaagattagcaaca |
24480942 |
T |
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| Q |
117 |
acaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24480943 |
acaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtcca |
24481042 |
T |
|
| Q |
217 |
aagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagt |
316 |
Q |
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| T |
24481043 |
aagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagt |
24481142 |
T |
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| Q |
317 |
caaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggagg |
416 |
Q |
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| T |
24481143 |
caaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggagg |
24481242 |
T |
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| Q |
417 |
agatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta |
509 |
Q |
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| T |
24481243 |
agatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta |
24481335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 576 - 677
Target Start/End: Original strand, 24481402 - 24481503
Alignment:
| Q |
576 |
tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtataca |
675 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24481402 |
tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggtgacttgtagacatatggtggtggaggtggcgacttgtataca |
24481501 |
T |
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| Q |
676 |
ta |
677 |
Q |
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|| |
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| T |
24481502 |
ta |
24481503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 24481922 - 24482009
Alignment:
| Q |
590 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacata |
677 |
Q |
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| T |
24481922 |
gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtacacatatggaggaggtggcggtgacttgtatacata |
24482009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 650
Target Start/End: Original strand, 24481820 - 24481880
Alignment:
| Q |
590 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatgg |
650 |
Q |
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| T |
24481820 |
gtggaggaggtggtgacttgtacacatatggaggaggtgggggtgacttgtacacatatgg |
24481880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 661
Target Start/End: Original strand, 24482054 - 24482125
Alignment:
| Q |
590 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtg |
661 |
Q |
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| T |
24482054 |
gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtatacatatggaggtggcggtg |
24482125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 661
Target Start/End: Original strand, 41899998 - 41900034
Alignment:
| Q |
625 |
ggtggcggcgacttgtagacatatggtggtggaggtg |
661 |
Q |
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||||| || |||||||||||||||||||||||||||| |
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| T |
41899998 |
ggtggtggggacttgtagacatatggtggtggaggtg |
41900034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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