View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_10 (Length: 445)
Name: NF19105_low_10
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 33298533 - 33298304
Alignment:
| Q |
29 |
gggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacatgtaatcagtaactacgtagaatacattacacaatatcatgcattagttaa |
128 |
Q |
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| T |
33298533 |
gggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacatgtaatcagtaactacgtagaatacattacacaatatcatgcattagttaa |
33298434 |
T |
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| Q |
129 |
acaaattccaaggttcaaaaacagcatgccatggttgtaaaaattgtctcatggatcaagagacgtgaaagactt-aaactttgaatattaaacaagttt |
227 |
Q |
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| T |
33298433 |
acaaattccaaggttcaacaacagcatgccatggttgtaaaaatggtctcatggatcaagagacgtgaaagacttaaaactttgaatactaaacaagttt |
33298334 |
T |
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| Q |
228 |
ctatagctcctccaacaaaagccaccttaa |
257 |
Q |
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| T |
33298333 |
ctatacctcctccaacaaaagccaccttaa |
33298304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 33298168 - 33298126
Alignment:
| Q |
386 |
gaaacgttgtgcataccatttgagctggattgaggtggcaaac |
428 |
Q |
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| T |
33298168 |
gaaacgttgtgcataccatttgagctggattgaggtggcaaac |
33298126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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