View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_13 (Length: 393)
Name: NF19105_low_13
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 88 - 376
Target Start/End: Complemental strand, 12615098 - 12614810
Alignment:
| Q |
88 |
tgtagctagtaatgtgatggaattgagagagagatatcaatagagaaaatgatatgtaaaaaggaaacattaaataaggctaagtggaaaaatttaggac |
187 |
Q |
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| T |
12615098 |
tgtagctagtaatgtgatggaattgagagagagatatcaatagagaaaatgatatgtaaaaaggaaacattaaaaaaggctaagtggaaaaatttaggac |
12614999 |
T |
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| Q |
188 |
tatagtccatagtcttattcaaagaaaatgattatatatttaaaaaagcatagtgtaaataaattaggttattcattgatttatggttattcattgtatg |
287 |
Q |
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| T |
12614998 |
tatagtccatagtcttattcaaagaaaatgattatatatttaaaaaagcatagtgtaaaaaaattaggttattcattgatttatggttattcattgtatg |
12614899 |
T |
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| Q |
288 |
aatgatagagatagaagtgtcccaacttttccttataaaacaacatgttggttttgtggtcctttagacatgcatttgagacacaattt |
376 |
Q |
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| T |
12614898 |
aatgatagagatagaagtgtcccaacttttccttataaaacaacatgttggttttgtggtcctttagacatgcatttgagacacaattt |
12614810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12615185 - 12615142
Alignment:
| Q |
1 |
ataaagattgtctcacatgtcattgggggccattggggggtgtg |
44 |
Q |
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| T |
12615185 |
ataaagattgtctcacatgtcattgggggccattggggggtgtg |
12615142 |
T |
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