View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19105_low_14 (Length: 326)
Name: NF19105_low_14
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_14 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 10502503 - 10502196
Alignment:
| Q |
2 |
gcatgtcgaagaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctacgacacaatagaactctgggccaattttctc |
101 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10502503 |
gcatgttgaaaaatgttatacactcaagggagggaaatggttggaaggaagaatcagaaccttcttctacgacacaatagaactctgggccaattttctc |
10502404 |
T |
|
| Q |
102 |
caatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10502403 |
caatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcacacaatattcacagttagtgatgttgatggat |
10502304 |
T |
|
| Q |
202 |
accatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaaca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10502303 |
accatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaaca |
10502204 |
T |
|
| Q |
302 |
tctcaagt |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
10502203 |
tctcaagt |
10502196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 10582520 - 10582276
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||| |||||||| ||||||| || |
|
|
| T |
10582520 |
gaattttatatactcaagggatggaaatggttggaaggaagaattagaaccttcttcaatctggacataatagaactccaggccaattgtctccaacatc |
10582421 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
|||| | ||| |||||| || |||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
10582420 |
tccataccacatatttctaggtccttaagagaaggtaactgccctattggtggaagtgtcacacaatattcacaattagtgatgcggagggataccatgt |
10582321 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgc |
253 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
10582320 |
tagaaaacgaagaatttcccaaccaactaggaaaacttgtcccgc |
10582276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 10090700 - 10090448
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||||||||| ||||||||||||| | |||| |||||||||| || |||||| ||||||| || |
|
|
| T |
10090700 |
gaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatg |
10090601 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
|||| | ||| ||||||| ||||||||||||| ||| |||| ||||||||||||| |||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
10090600 |
ttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatattcacaattactgatacagagggataccatgt |
10090501 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
10090500 |
tagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaag |
10090448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 10197583 - 10197331
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||||||||| ||||||||||||| | |||| |||||||||| || |||||| ||||||| || |
|
|
| T |
10197583 |
gaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatg |
10197484 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
|||| | ||| ||||||| ||||||||||||| ||| |||| ||||||||||||| |||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
10197483 |
ttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatattcacaattactgatacagagggataccatgt |
10197384 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
10197383 |
tagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaag |
10197331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 10262608 - 10262357
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||| | |||| |||||||||| || |||||| ||||||| | |
|
|
| T |
10262608 |
gaattttatacgctcaagggattgaaatggttggaaggaagaacaagaaccttcttctccttggacataatagaactccggaccaattgtctccaacctc |
10262509 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
|||| | ||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
10262508 |
ttcataccacatatttctaggtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgt |
10262409 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
|| ||||||||||||||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
10262408 |
tataaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaa |
10262357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 10361972 - 10362202
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacatataccct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||| | |||| |||||||||| |||||||| ||||||| || |||| | | |
|
|
| T |
10361972 |
ctcaagggatggaaatggttggaaggaagaattagaaccatcttcaatctggacataatagaactccaggccaattgtctccaacatgttcataccacat |
10362071 |
T |
|
| Q |
121 |
atacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaag |
220 |
Q |
| |
|
|| ||||| | || |||||||||| |||||||| ||||||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
10362072 |
atttttaggaccttcagagaaggtaactgccctaagggtggaagtatcacacaatattcacaattagtgatgcggagggataccatgttagaaaacgaag |
10362171 |
T |
|
| Q |
221 |
aatttcccaaccaatttggaaagcttgtccc |
251 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| |
|
|
| T |
10362172 |
aatttcccaaccaactaggaaaacttgtccc |
10362202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 10530552 - 10530305
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaacctt---cttctacgacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
10530552 |
ttatacgctcaagggacggaaatggttggaaggaagaatttgaaccttctccttcttggacacaatagaactctgagccaattctctccaatatcttcat |
10530453 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
|| ||| ||||||| || ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||| |||| | || ||||||||| || |
|
|
| T |
10530452 |
atcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcacaattatcgatgcgaagagacaccatgttataa |
10530353 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||| |||| ||||| | |||||||||||| |||||||||| ||||||| |
|
|
| T |
10530352 |
aacaaagagtttccgacccaatttggaaaacttgtcccgccatacaag |
10530305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 10679343 - 10679096
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaacctt---cttctacgacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
10679343 |
ttatacactcaagggacggaaatggttggaaggaagaatttgaaccttctccttcttggacacaatagaactctgagccaattctctccgatatcttcat |
10679244 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
|| ||| ||||||| || ||||||||||| ||||||| ||||||||||||||| ||||||||| | ||| |||| | || ||||||||| | |
|
|
| T |
10679243 |
atcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcagaattatcgatgcgaagagacaccatgttatag |
10679144 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||| |||| ||||| | |||||||||||| |||||||||| ||||||| |
|
|
| T |
10679143 |
aacaaagagtttcctacccaatttggaaaacttgtcccgccatacaag |
10679096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 10033905 - 10033659
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||| ||| |||| ||| | | || |||||||||| ||||||||| ||||||| || ||| |
|
|
| T |
10033905 |
ttatacgctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccat |
10033806 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| | ||| || ||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
10033805 |
accacgtatttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgaagagataccatgttagaa |
10033706 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
||| ||||||||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
10033705 |
aacaaagaatttcccaaccaactcggaaagcttgtcccaccatacaa |
10033659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 10665436 - 10665184
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| || ||||| || | |||| |||||||||| ||||||||| ||||||| || |
|
|
| T |
10665436 |
gaattttatacactcaagggatggaaatggttggaaggaagaacttgagccttcctcaatctggacataatagaactccgggccaattgtctccaacatc |
10665337 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
||| | | ||| ||||| ||||||||||||| | ||| | ||||||||| ||| |||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
10665336 |
tccatgtcgcatatttctaggttcttgagagaaggtaacttcccaaggggtggaagtatcacacaatattcacaattactgatacagagggataccatgt |
10665237 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || | ||||||| |
|
|
| T |
10665236 |
tagaaaacgaagaatttcccaaccaacttggaaagcttgttccaccatacaag |
10665184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 10128823 - 10128584
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacatataccct |
120 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| |||| ||| | | || |||||||||| ||||||||| ||||||| || |||| | | |
|
|
| T |
10128823 |
ctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacgt |
10128724 |
T |
|
| Q |
121 |
atacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaag |
220 |
Q |
| |
|
|| || ||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||| |
|
|
| T |
10128723 |
atttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgttagaaaacaaag |
10128624 |
T |
|
| Q |
221 |
aatttcccaaccaatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
|||||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
10128623 |
aatttcccaaccaactcggaaagcttgtcccaccatacaa |
10128584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 10432203 - 10432442
Alignment:
| Q |
12 |
gaatattatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatatt |
108 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||||| || ||||| || | |||| |||||||||||| ||||||| ||||||| || |
|
|
| T |
10432203 |
gaattttatacgctcaagggatggaaatggtaggaaggaagaattggagccttcatcaatctggacaaaatagaactctgtgccaattgtctccaacatc |
10432302 |
T |
|
| Q |
109 |
aacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgt |
208 |
Q |
| |
|
|||| | ||| |||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
10432303 |
ttcataccacatatttgtaggtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacagagggataccatgt |
10432402 |
T |
|
| Q |
209 |
tagaaaacgaagaatttcccaaccaatttggaaagcttgt |
248 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
10432403 |
ccgaaaacgaagaatttcccagccaactcggaaagcttgt |
10432442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 10374009 - 10374256
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||| |||||||| | | || |||||||||| ||||||||| ||||||| || ||| |
|
|
| T |
10374009 |
ttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccat |
10374108 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| | ||| || ||| ||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||| |||| ||| |||||||||||| || |
|
|
| T |
10374109 |
accacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
10374208 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
10374209 |
aacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaag |
10374256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 10519391 - 10519144
Alignment:
| Q |
16 |
attatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaaca |
112 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| | | || |||||||||| ||||||||| ||||||| || || |
|
|
| T |
10519391 |
attatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaacatctcca |
10519292 |
T |
|
| Q |
113 |
tataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttaga |
212 |
Q |
| |
|
|| | ||| |||||| ||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||| |||| ||| |||||||||||| | |
|
|
| T |
10519291 |
taccacatatttctaggtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttata |
10519192 |
T |
|
| Q |
213 |
aaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| |||||||| | |||||| |
|
|
| T |
10519191 |
aaacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaa |
10519144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 10079308 - 10079068
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacatataccct |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||||| | |||| |||||||||| ||||||||| ||||||| || ||| | |
|
|
| T |
10079308 |
ctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaaat |
10079209 |
T |
|
| Q |
121 |
atacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaag |
220 |
Q |
| |
|
|| |||||| |||||||||||||||||||| | ||||||||| ||| |||||||||||| | |||||| || |||||||| |||| ||||||||| |
|
|
| T |
10079208 |
atttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcacacaatattcacaatcagtgattacgagggataccaagttacaaaacgaag |
10079109 |
T |
|
| Q |
221 |
aatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||||||| |||||| | | |||||||||||| | ||||||| |
|
|
| T |
10079108 |
aatttcctaaccaactcgaaaagcttgtcccaccatacaag |
10079068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 261
Target Start/End: Complemental strand, 11771128 - 11770892
Alignment:
| Q |
28 |
agggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacatataccctatac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| | |||| ||||||||| | | |||| | |||||||| | |||| | ||| |
|
|
| T |
11771128 |
agggatggaaatggttggaaggaagaattggaacctacttctccctggacataatagaacttcgaacaaattgtatccaatatcatcataccacatattt |
11771029 |
T |
|
| Q |
125 |
ttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatt |
224 |
Q |
| |
|
||| || |||||||||||||| ||||||| ||||||||||||| |||||||||||| ||| | || || |||||||||||||||||| |||||||| |
|
|
| T |
11771028 |
ctagctccttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgttagaaaatgaagaatt |
11770929 |
T |
|
| Q |
225 |
tcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||||| |||| | |||||||||||||| | ||||||| |
|
|
| T |
11770928 |
tcccagccaactcggaaagcttgtcccaccatacaag |
11770892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 9840766 - 9840517
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||| |||||||| | | || |||||||||| ||||||||| ||||||| || ||| |
|
|
| T |
9840766 |
ttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaacatctccat |
9840667 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| | ||| || ||| ||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||| |||| ||| ||||| |||||| || |
|
|
| T |
9840666 |
accacgtatttctacgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagatacgatgttataa |
9840567 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtc |
263 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||| | ||||||||| |
|
|
| T |
9840566 |
aacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaagtc |
9840517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 9851644 - 9851395
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||| |||||||| | | || |||||||||| |||||||| ||||||| || ||| |
|
|
| T |
9851644 |
ttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccaggccaattgtctccaacatctccat |
9851545 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| | ||| || ||| ||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||| |||| ||| |||||||||||| || |
|
|
| T |
9851544 |
accacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
9851445 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtc |
263 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||| | ||||||||| |
|
|
| T |
9851444 |
aacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaagtc |
9851395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 11158245 - 11158430
Alignment:
| Q |
78 |
atagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatat |
177 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| | ||||||||||| ||||||| || |||||| |||| ||||||||||| | ||||||| |
|
|
| T |
11158245 |
atagaactctggaccaattgtctccaatattgacatacctcttatacttaggttcttgagagcagatagttgtcctagtggtggaagtgttacacaatat |
11158344 |
T |
|
| Q |
178 |
tcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtc |
263 |
Q |
| |
|
|||| || ||| | | || |||||||||||||| ||||||| |||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
11158345 |
ccacaattttctatgctaagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcccaccatacaagtc |
11158430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 11780265 - 11780393
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| |||||||||||| ||| | || || |||||||||||| ||||| |||| |||||||| || |
|
|
| T |
11780265 |
ttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgtttgaaaatgaaggatttcccagcc |
11780364 |
T |
|
| Q |
233 |
aatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |
|
|
| T |
11780365 |
aacttggaaagcttgtcccaccatacaag |
11780393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 11147028 - 11147267
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctacgacacaatagaactctgggccaattttctccaatattaacatataccctata |
123 |
Q |
| |
|
|||||| |||||||| ||||| || ||||||| |||||| || | || | | |||||||||||| |||||| |||||||||| ||||| | |||| |
|
|
| T |
11147028 |
ctcaagcgatggaaaaggttgaaatgaagaattggaacctcctccaacaatgccatagaactctggaccaattgtctccaatatatacatacctcttata |
11147127 |
T |
|
| Q |
124 |
cttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaat |
223 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| ||||||||||||| ||||||| |||| | || | || |||||||||||||| ||||||| |
|
|
| T |
11147128 |
cttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatatccacaatgttgaattgacagtgacaccatgttagaaaatgaagaat |
11147227 |
T |
|
| Q |
224 |
ttcccaaccaatttggaaagcttgtcccgctatacaagtc |
263 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
11147228 |
ctcccaaccaacttggaaagcttgtcccaccatacaagtc |
11147267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 10186278 - 10186038
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacatataccct |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||||| | |||| |||||||||| ||||||||| ||||||| || ||| | |
|
|
| T |
10186278 |
ctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaaat |
10186179 |
T |
|
| Q |
121 |
atacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaag |
220 |
Q |
| |
|
|| |||||| |||||||||||||||||||| | ||||||||| || |||||||||||| | |||||| || ||| |||| |||| ||||||||| |
|
|
| T |
10186178 |
atttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcgcacaatattcacaatcagtgattacgagggacaccaagttacaaaacgaag |
10186079 |
T |
|
| Q |
221 |
aatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
||||||| |||||| | | |||||||||||| | ||||||| |
|
|
| T |
10186078 |
aatttcctaaccaactcgaaaagcttgtcccaccatacaag |
10186038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 262
Target Start/End: Original strand, 11129257 - 11129441
Alignment:
| Q |
78 |
atagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatat |
177 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| | |||| ||||||| |||||||||| |||||| |||| ||||||||||||| ||||||| |
|
|
| T |
11129257 |
atagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatat |
11129356 |
T |
|
| Q |
178 |
tcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagt |
262 |
Q |
| |
|
||| || ||| | || |||||||||||||| ||||||| |||||||||| | ||||| |||||||||| ||| |||| |
|
|
| T |
11129357 |
cgacaattttctatgcaaagtgacaccatgttagaaaatgaagaatctcccaaccaactaggaaaacttgtcccgccataaaagt |
11129441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 8863181 - 8862954
Alignment:
| Q |
24 |
ctcaagggatggaaatggttggaaggaagaatcagaaccttcttctacgacacaatagaactctgggccaattttctccaatattaacatataccctata |
123 |
Q |
| |
|
||||||||||||||| || || || ||||||| |||||| |||| || | | |||||||||||| |||||| ||||||||||| ||||| ||| |
|
|
| T |
8863181 |
ctcaagggatggaaaaggatgaaatgaagaattggaacctccttcaaccatgccatagaactctggaccaattgtctccaatattgacatacctgttatc |
8863082 |
T |
|
| Q |
124 |
cttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaat |
223 |
Q |
| |
|
||||||| || ||||||| |||||| |||| ||||||||||||| ||||||| |||| || ||| | || |||||||||||||| ||||||| |
|
|
| T |
8863081 |
tttaggtcctttagagaagatagttgtcctagtggtggaagtgtcacacaatatccacaattttcaatgcacagtgacaccatgttagaaaatgaagaat |
8862982 |
T |
|
| Q |
224 |
ttcccaaccaatttggaaagcttgtccc |
251 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
8862981 |
ctcccaaccaacatggaaagcttgtccc |
8862954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 10891147 - 10890974
Alignment:
| Q |
78 |
atagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatat |
177 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| | |||| ||||||| |||||||||| |||| | |||| ||||||||||||| ||||||| |
|
|
| T |
10891147 |
atagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatagtcgtcctagtggtggaagtgtcacacaatat |
10891048 |
T |
|
| Q |
178 |
tcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtccc |
251 |
Q |
| |
|
|||| || ||| | || |||||||||||||| ||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
10891047 |
ccacaattttcaatgcacagtgacaccatgttagaaaatgaagaatctcctaaccaacatggaaagcttgtccc |
10890974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 11244854 - 11245037
Alignment:
| Q |
78 |
atagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatat |
177 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||| ||||||||||| || |||||| ||||||||| ||||| || || ||||||| ||||||| |
|
|
| T |
11244854 |
atagaactccaggccaattgtctccaatatcgacatacctcctatacttagatccttgagacaaggtagtttccctactggaggtagtgtcacacaatat |
11244953 |
T |
|
| Q |
178 |
tcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
261 |
Q |
| |
|
|| | ||| |||| | || |||||||||||||| ||||||| |||||| ||| |||||| ||||||| || ||||||| |
|
|
| T |
11244954 |
gcaaaattatcgatgcaaagagaaaccatgttagaaaatgaagaatctcccaatcaacatggaaaacttgtcctgccatacaag |
11245037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 13334693 - 13334578
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | |||||||||||| || | ||| | ||| ||||||||||||||| ||| || ||||||| |
|
|
| T |
13334693 |
ttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcacccaacc |
13334594 |
T |
|
| Q |
233 |
aatttggaaagcttgt |
248 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
13334593 |
aactcggaaagcttgt |
13334578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 13345872 - 13345745
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | |||||||||||| || | ||| | ||| ||||||||||||||| | | || ||||||| |
|
|
| T |
13345872 |
ttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaatggatcacccaacc |
13345773 |
T |
|
| Q |
233 |
aatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
|| | |||||||||||||| | |||||| |
|
|
| T |
13345772 |
aactcggaaagcttgtcccaccatacaa |
13345745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 13162769 - 13162654
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | |||||||||||| || | ||| | ||| ||||||||||||||| ||| || ||||||| |
|
|
| T |
13162769 |
ttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcacccaacc |
13162670 |
T |
|
| Q |
233 |
aatttggaaagcttgt |
248 |
Q |
| |
|
|| | || |||||||| |
|
|
| T |
13162669 |
aactcgggaagcttgt |
13162654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 13397203 - 13397112
Alignment:
| Q |
202 |
accatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatgg |
293 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||||||||| |||| | ||| || | ||| | | |||||||||||||| |||||| |
|
|
| T |
13397203 |
accatgttagaaaacgaacaatcccccaaccaacttggaaagcttatcccaccatagaatttaatgctcaatttcttcaagtttattgatgg |
13397112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 11780157 - 11780198
Alignment:
| Q |
28 |
agggatggaaatggttggaaggaagaatcagaaccttcttct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11780157 |
agggatggaaatggttggaaggaagaattggaacctacttct |
11780198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 11486940 - 11486646
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| |||| ||| | || | |||||||||||||||| |||||||| ||||||| || ||||| |
|
|
| T |
11486940 |
ttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttccttccttgacacaatagaactcttggccaattgtctccaacatcaacat |
11486841 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
|| || |||||| || | |||||||| ||||||||||||| ||||||||||||||| ||||||||||| | | |||||| | ||| ||||| |||||| |
|
|
| T |
11486840 |
attccttatactcagtttcttgagagatggtagttgccctagcggtggaagtgtcatgcaatattcacaatcattgatgtaaagggacaccattttagaa |
11486741 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaacatctcaag |
308 |
Q |
| |
|
|| ||||||| ||||||||||| ||||| |||||||| | ||||||||| ||| | ||| |||| |||||| || |||||||||||| ||||| |
|
|
| T |
11486740 |
aatgaagaatcacccaaccaattcggaaaacttgtcccaccatacaagtcaatgctcagtcccttcgagtttattggtggatgcaacatatcaag |
11486646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 308
Target Start/End: Original strand, 44955960 - 44956135
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
|||||| |||| |||||||| | |||||||||||| | |||||| | || ||| ||||| | ||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
44955960 |
ttgagaaaaggcagttgccccagcggtggaagtgttacacaataccctcaattactgatgcaaagggacgccatgttagaaaacgaaaaatctcccaacc |
44956059 |
T |
|
| Q |
233 |
aatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaacatctcaag |
308 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| || |||| |||||| ||| | || ||| |||||||| ||||| |
|
|
| T |
44956060 |
aatttggaaagcttgtcccaccatagaagtcaatttttagactcttcaggttcattggtggttgcaacatatcaag |
44956135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 17851089 - 17851384
Alignment:
| Q |
16 |
attatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaaca |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||||||| ||||||||| || | |||| |||||||||||| || ||| |||||||||| || |
|
|
| T |
17851089 |
attaaacactcaagggacggaaatggttgaaaggaagaattggaaccttctcctgcctggacatgatagaactctggaccgattctctccaatatctcca |
17851188 |
T |
|
| Q |
113 |
tataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttaga |
212 |
Q |
| |
|
|| | || |||||| || ||||||||||| ||||| | ||||||||||||||| |||| ||||| ||| ||||| | | | || |||||||| |
|
|
| T |
17851189 |
taccacaaattagtaggtccttcagagaaggtagctgccccagcggtggaagtgtcatgcaatgttcaccattactgatgcccaagaacacgatgttaga |
17851288 |
T |
|
| Q |
213 |
aaacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaacatctcaag |
308 |
Q |
| |
|
||||||||||| ||| | |||| ||||||| |||||||| | ||| ||||| ||| |||||||||||| ||| || ||||| |||||||| ||||| |
|
|
| T |
17851289 |
aaacgaagaatctcctagccaacttggaaaacttgtcccaccataaaagtcaatgcttagtttcttcaggttaaccgatggttgcaacatatcaag |
17851384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 55766 - 56012
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||| ||| |||| ||| | | || |||||||||| ||||||||| ||||||| || ||| |
|
|
| T |
55766 |
ttataaactcaagggataggaatggttggaaggaagaattagatccttattcaatctgggcataatagaactccgggccaattgtctccaacatctccat |
55865 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| | ||| || ||| ||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||| |||| ||| |||||||||||| || |
|
|
| T |
55866 |
accacatatttctaagtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
55965 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaa |
260 |
Q |
| |
|
|| |||||| ||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
55966 |
aatgaagaacttcccaaccaactcggaaagcttgtcccaccatacaa |
56012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 29838435 - 29838251
Alignment:
| Q |
124 |
cttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaat |
223 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| | ||||||||| | ||||||||||| ||| ||||| | | | | ||||||||| | || ||||||| |
|
|
| T |
29838435 |
cttaggtccttgagagaagatagatgccctagtgatggaagtgtaaggcaatattcacaattactgatgctaaggtacaccatgttaaagaatgaagaat |
29838336 |
T |
|
| Q |
224 |
ttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaacatctcaag |
308 |
Q |
| |
|
|||||||||| ||||||||||| | |||| ||| || | || | |||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
29838335 |
ctcccaaccaacttggaaagctttttccgccatagtagccaatactcagtttcttcaagtttattgatggtcgcaacatatcaag |
29838251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 26908793 - 26908499
Alignment:
| Q |
17 |
ttatacactcaagggatggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacat |
113 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||| || ||||| || | |||| ||||| | |||||||||||| ||||||| ||| ||| |
|
|
| T |
26908793 |
ttatacgctcaagggattgaaatggttggaaggaaaaattggagccttcctcaatctggacataatagtaatctgggccaattgtctccaacattttcat |
26908694 |
T |
|
| Q |
114 |
ataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaa |
213 |
Q |
| |
|
| ||| |||||| |||||| |||||||||| |||| ||||||||||| ||| ||||||| ||||| |||| | ||| ||||| |||||| |
|
|
| T |
26908693 |
accatgtatttctaggtccttgagaaaaggtagttgtcctaggggtggaagtgttgggcaaaattcacaattagttatgtgaagggacaccatcttagaa |
26908594 |
T |
|
| Q |
214 |
aacgaagaatttcccaaccaatttggaaagcttgtcccgctatacaagtctatgattagtttcttcaagtttactgatggatgcaacatctcaag |
308 |
Q |
| |
|
|| ||||| | |||||||||| | || || |||||||| | ||||||||| || | || |||||| |||| || |||||||||||| ||||| |
|
|
| T |
26908593 |
aatgaagagtctcccaaccaactcgggaaacttgtcccaccatacaagtcaattttcaggctcttcagatttattggtggatgcaacatatcaag |
26908499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 144219 - 144334
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | |||||||||||| || | ||| | ||| ||||||||||||||| ||| || ||||||| |
|
|
| T |
144219 |
ttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcacccaacc |
144318 |
T |
|
| Q |
233 |
aatttggaaagcttgt |
248 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
144319 |
aactcggaaagcttgt |
144334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 152524 - 152639
Alignment:
| Q |
133 |
ttgagagaaggtagttgccctaacggtggaagtgtcatacaatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaacc |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | |||||||||||| || | ||| | ||| ||||||||||||||| ||| || ||||||| |
|
|
| T |
152524 |
ttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcacccaacc |
152623 |
T |
|
| Q |
233 |
aatttggaaagcttgt |
248 |
Q |
| |
|
|| | || |||||||| |
|
|
| T |
152624 |
aactcgggaagcttgt |
152639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University