View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19105_low_15 (Length: 324)
Name: NF19105_low_15
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 28649814 - 28650124
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28649814 |
taagttaaataaagaactctattttttggca-ttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
28649912 |
T |
|
| Q |
101 |
tgtcc-aacaacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatc |
199 |
Q |
| |
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||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |
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| T |
28649913 |
tgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgttttcacgattgcattgaacacttcttggcaatc |
28650012 |
T |
|
| Q |
200 |
ttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattttgccttaaaatcaaacga |
299 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| ||||| ||| |||||||||||| |
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| T |
28650013 |
taggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttatgatcgaatattgagagattgcatcgaatttcgccacaaaatcaaacga |
28650112 |
T |
|
| Q |
300 |
cgtttggaattt |
311 |
Q |
| |
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| |||||||||| |
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|
| T |
28650113 |
catttggaattt |
28650124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 10124213 - 10124512
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||| ||||||| | ||||||||||||||||| |||||||||| ||| || ||||||||||||||| |
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| T |
10124213 |
taagttaaataaagaaccctattctt-ggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatt |
10124311 |
T |
|
| Q |
101 |
tgtcc-aacaacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatc |
199 |
Q |
| |
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||||| | ||||| ||||||| |||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||| || ||| | ||||| |
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|
| T |
10124312 |
tgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttgattgcaatgcacacacttcatcaatc |
10124411 |
T |
|
| Q |
200 |
ttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattttgccttaaaatcaaacga |
299 |
Q |
| |
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|||||| ||||||| || ||||||||||||||||||||| || | ||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||| |
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| T |
10124412 |
ttggatacatcaaagtctctggtgccctatcatgcatggtgttgaagtttgtaactaaatattgggagattacatcgaatttcgccaccaaatcaaacga |
10124511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25044337 - 25044621
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25044337 |
taagttaaataaagaaccctattttt-ggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatt |
25044435 |
T |
|
| Q |
101 |
tgtcc-aacaacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatc |
199 |
Q |
| |
|
||||| |||| || ||||||| ||||||||||||| |||||||| |||||||||||||||| | ||||||| | ||||| || ||| ||||||||||| |
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| T |
25044436 |
tgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgttttctttgttgcaatgcacacatcttggcaatc |
25044535 |
T |
|
| Q |
200 |
ttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattttgcc |
285 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||| |
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|
| T |
25044536 |
ttggattcatcaaaattcccggtgccctatcatgcatggtattcatgtttgtgaccaaatactgagcgattacatcaaattttgcc |
25044621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25040599 - 25040868
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| | || |||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| ||| |
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|
| T |
25040599 |
taagtcaaataaagaactctattctt-ggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatt |
25040697 |
T |
|
| Q |
101 |
tgtccaa-caacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatc |
199 |
Q |
| |
|
||||| | ||||| ||||||| |||||||||||||||||||||||||||| | ||| || | | | ||||| |||||||| || || | |||||||| |
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|
| T |
25040698 |
tgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttggcaatt |
25040797 |
T |
|
| Q |
200 |
ttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagatt |
270 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
25040798 |
ttggattcatcaaaatttgtggtgccctatcatgcatggtgttcatgtttgtaaccaaatattgagagatt |
25040868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 25042939 - 25043026
Alignment:
| Q |
194 |
gcaatcttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattt |
281 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||| ||||| ||||||||||| ||| |||||||| ||||||| |||||||| |
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| T |
25042939 |
gcaatcttggatacatcaaaagcgttggtgccctatcatgtatggtgttcatgtttgtgaccaaatattgatagattacgtcaaattt |
25043026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 21393243 - 21392963
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||| |||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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|
| T |
21393243 |
taagtcaaataaagaactctattctt-ggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
|
| Q |
101 |
tgtccaa-caacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatc |
199 |
Q |
| |
|
||||| | ||| | ||||||| |||||||||||||||||||||| ||||||| ||| |||| | ||||||| |||||||| || |||| |||||||| || |
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|
| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgattgcaatgtgcacatcttggcagtc |
21393045 |
T |
|
| Q |
200 |
ttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattt |
281 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
21393044 |
ttggattcatcaagatctttggtgccctatcatgcatggtgttcatgttcgtaaccaaatattgagagattacatcgaattt |
21392963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 21422557 - 21422237
Alignment:
| Q |
1 |
taagttaaataaagaactctattttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatt |
100 |
Q |
| |
|
||||| |||||||||||| |||| || ||||| ||| | |||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
21422557 |
taagtcaaataaagaactgtattctt-ggcacctgtgcgatgatgattgttatacttgcaaaaatacttcaaatgttcaagcttgcaacaaccaagcatt |
21422459 |
T |
|
| Q |
101 |
tgtcc-----aacaacaaaaacaacaaattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggc |
195 |
Q |
| |
|
||||| | ||||| ||||||| ||| ||||||||||||||||||||||||||| ||||| | | ||||||| |||||||| || ||| | | ||| |
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|
| T |
21422458 |
tgtcccggccagcaacagaaacaaccaatagatattctttttcttctcagcaattattggcttgacactgttttcttgattgcaatgcacacatttaggc |
21422359 |
T |
|
| Q |
196 |
aatcttggattcatcaaaatccatggtgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattacatcaaattttgccttaaaatcaa |
295 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||| | ||||| | |
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|
| T |
21422358 |
aattttggattcatcaaattctctggtgccctatcatgcatgttgttcatgtttgtaaccaaatatcgagagattacatcaaattttgcttgcaaatcga |
21422259 |
T |
|
| Q |
296 |
acgacgtttggaattttcttcg |
317 |
Q |
| |
|
||||| ||||||| ||| |||| |
|
|
| T |
21422258 |
acgacatttggaactttgttcg |
21422237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 1975159 - 1975242
Alignment:
| Q |
69 |
tcaattgtttaagattgcaacaaccaagcatttgtccaa-caacaaaaacaacaaattgatattctttttcttctcagcaatta |
151 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| | ||||| ||||||| |||||||| |||||||||||| |||||||| |
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|
| T |
1975159 |
tcaattgcttaagggtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaatta |
1975242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 24690549 - 24690799
Alignment:
| Q |
23 |
tttttggcacttgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtc-caacaacaaaaacaaca |
121 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||| | |||| || | | ||||||||||||| |||||||| || |||| |||||| |
|
|
| T |
24690549 |
tttttggcacttgttcgatgatgattgttatacttgcaaaaataccttaattattcatgcttgcaacaaccaatcatttgtctcagaaacagaaacaatc |
24690648 |
T |
|
| Q |
122 |
aattgatattctttttcttctcagcaattatcggcttcaaattgttttcatgattgcattgagcacttcttggcaatcttggattcatcaaaatccatgg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||| |||| |||||||| || ||| | ||| |||||||||||||||||||||| | |
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|
| T |
24690649 |
aattgatattctttttcttctcaataattaccggcttcacattggtttcttgattgcaatgtacacattttgacaatcttggattcatcaaaatctttct |
24690748 |
T |
|
| Q |
222 |
tgccctatcatgcatggtattcatgtttgtaaccgaatattgagagattac |
272 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| | ||||| || ||||| |
|
|
| T |
24690749 |
tgccctatcatgcatggtgttcaagtttgtaaccaactattgggaaattac |
24690799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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