View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_2 (Length: 622)
Name: NF19105_low_2
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Original strand, 36846463 - 36847061
Alignment:
| Q |
19 |
agcactaactcttttttctcttgcaagcacttcgtgagatcgtagagtttccgtgctaggaagaaaaa-cgcttaaggtaagaaaaggttctaaattaga |
117 |
Q |
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| T |
36846463 |
agcactaactcttttttctcttgcaagcacttcgtgagatcgtagagtttccgtgctaggaagaaaaaacgcttaaggtaagaaaaggttctaaattaga |
36846562 |
T |
|
| Q |
118 |
tgaattaaaggagtttttgttgttctaaaggaaagcttggttttgatgttcatatttgagcgatatgtgaattttctcatgtctaaataccgaaagttga |
217 |
Q |
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| T |
36846563 |
tgaattaaaggagtttttgttgttctaaaggaaagcttggttttgatgttcatatatgagcgatatgtgaactttctcatgtctaaatatcgaaagttga |
36846662 |
T |
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| Q |
218 |
acttcaatgtattcatgtggaaaatatgatttttatgcaataagtgatgaaagttttaatctnnnnnnntttatacatgcagtgtcgtgtgtctctccaa |
317 |
Q |
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| T |
36846663 |
acttcaatgtattcatgtggaaaatatgatttttatgcaataagtgatgaaagttttaatctaaaaaaatttatacatgcagtgtcgtgtgtgtctccaa |
36846762 |
T |
|
| Q |
318 |
gacttttgattttgaggccttaggctaaacttgttaagagagtgcttgataatataacatgagcaccatgtattcgatattcctcttgctttgctaacac |
417 |
Q |
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| T |
36846763 |
gacttttgattttgaggccttaggctaaacttgttaagagagtacttgataatataacatgagcaccatgtattcgatattcctcttgctttgctaacac |
36846862 |
T |
|
| Q |
418 |
actgactaatgaataacttcttttatttacttattttgcagataattgcattttattcactaatttaaccatgtcctctttcaaa----catggtcttgg |
513 |
Q |
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| T |
36846863 |
actgaccaatgaataacttcttttatttacttattttgcagataattgcattttattcactaatttaaccatgtcctctttcaaacatgcatggtcttgg |
36846962 |
T |
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| Q |
514 |
tctctaccttcttctacttgtcgtttcccacagcctgcttacaagtccaatggcctatgcctggtatggccgccgacgaggtaatacaaacttattcat |
612 |
Q |
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| T |
36846963 |
tctctaccttcttctacttgtcgtttcccacagcctgcttacaagtccaatggcctatgcctggtatggccgccgacgaggtaatacaaacttattcat |
36847061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 453 - 585
Target Start/End: Original strand, 36839326 - 36839458
Alignment:
| Q |
453 |
ttgcagataattgcattttattcactaatttaaccatgtcctctttcaaacatggtcttggtctctaccttcttctacttgtcgtttcccacagcctgct |
552 |
Q |
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||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36839326 |
ttgcagataattgcattctattcactaattcaaccatgtcatccttcaaacatggtcttggtctctaccttcttctacttgtcttttcccacagcctgct |
36839425 |
T |
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| Q |
553 |
tacaagtccaatggcctatgcctggtatggccg |
585 |
Q |
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| T |
36839426 |
tacaagtccagttgcctatgcctggtttggccg |
36839458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 36835508 - 36835585
Alignment:
| Q |
485 |
accatgtcctctttcaaacatggtcttggtctctaccttcttctacttgtcgtttcccacagcctgcttacaagtcca |
562 |
Q |
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| T |
36835508 |
accatgtcctctttcaaacatggtcttggtctctaccttcttctacttgtcttttcccacatcctccttacaagtcca |
36835585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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