View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19105_low_22 (Length: 262)

Name: NF19105_low_22
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19105_low_22
NF19105_low_22
[»] chr5 (3 HSPs)
chr5 (130-248)||(36578596-36578714)
chr5 (130-230)||(34278720-34278820)
chr5 (1-64)||(36578780-36578841)
[»] chr8 (4 HSPs)
chr8 (148-244)||(29802693-29802789)
chr8 (130-228)||(17495901-17495999)
chr8 (130-193)||(35793618-35793681)
chr8 (178-228)||(32061304-32061354)
[»] chr3 (5 HSPs)
chr3 (130-230)||(22755513-22755613)
chr3 (131-226)||(40414939-40415034)
chr3 (130-230)||(28389221-28389320)
chr3 (138-230)||(30080693-30080785)
chr3 (130-230)||(30681923-30682023)
[»] chr2 (4 HSPs)
chr2 (130-238)||(24853254-24853362)
chr2 (130-242)||(41491943-41492055)
chr2 (136-244)||(45001840-45001948)
chr2 (130-181)||(14802921-14802972)
[»] chr4 (1 HSPs)
chr4 (131-229)||(19533972-19534070)
[»] chr7 (1 HSPs)
chr7 (168-230)||(23816601-23816663)
[»] chr1 (2 HSPs)
chr1 (130-228)||(40711051-40711151)
chr1 (136-244)||(26345364-26345472)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 36578714 - 36578596
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36578714 catctcatatgctataatttgtctttacatactagtaaaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 36578615  T
Q  230 gcgatgaagagagtattat 248  Q
    || |||||| |||||||||    
T  36578614 gcaatgaagggagtattat 36578596  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 34278720 - 34278820
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||| ||||| |||| |||||||||| ||| |||||||||||||  |||||||||| |||| |||| | || |||| || |||||| ||||| ||||||    
T  34278720 catcttatatgttatattttgtctttatatattagtagaaaaataaggtcaaaacatgttatatgaacaatacacattttaaaattaggtcatataaaat 34278819  T
Q  230 g 230  Q
    |    
T  34278820 g 34278820  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36578841 - 36578780
Alignment:
Q  1 cctccgtccatatcaagtgacacagttaactctgtcatatataaattaatgcacaattttcatc 64  Q
    |||||||| |||| |||||| |||||||||||||||||||||  || |||||||||||||||||    
T  36578841 cctccgtctatattaagtgatacagttaactctgtcatatat--atcaatgcacaattttcatc 36578780  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 29802693 - 29802789
Alignment:
Q  148 ttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaatgcgatgaagagagta 244  Q
    ||||||||  ||| |||||||||||||| ||||||||||||||| |||||| || |||| ||||||||| ||||| ||||||| |||| || |||||    
T  29802693 ttgtctttgtatattagtagaaaaatatggtcaaaacatattatatgaataatacacattttcaaattaggtcatataaaatgggatggagggagta 29802789  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 17495999 - 17495901
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaa 228  Q
    ||||| |||||||| |||||||||||  ||| ||  |||||||||| ||||||| || |||| | ||||||  |||| || ||||||||||||||||||    
T  17495999 catcttatatgctacaatttgtctttgtatagtataagaaaaatatggtcaaaatatgttatattaatagtgcacatttttaaattaagtcatttaaaa 17495901  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 35793681 - 35793618
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattattt 193  Q
    ||||| |||||||||||||||  |||| ||| ||||||||||||||  |||||| |||||||||    
T  35793681 catcttatatgctataatttgattttatataatagtagaaaaatatcatcaaaatatattattt 35793618  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 32061304 - 32061354
Alignment:
Q  178 tcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaa 228  Q
    |||||| ||||||| |||||| | |||||||||||| ||||||||||||||    
T  32061304 tcaaaatatattatgtgaataatgtacatcttcaaagtaagtcatttaaaa 32061354  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 22755613 - 22755513
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||| |||||| |||||||||||||  |||  ||||||||||||| |||||||||| |||| ||||||||  |||| || |||||| ||||||||||||    
T  22755613 catcttatatgcaataatttgtctttgtatataagtagaaaaatatggtcaaaacatgttatgtgaatagtgcacattttgaaattaggtcatttaaaat 22755514  T
Q  230 g 230  Q
    |    
T  22755513 g 22755513  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 40415034 - 40414939
Alignment:
Q  131 atctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaa 226  Q
    |||| ||||| |||| |||||||||| ||| |||||||||||||   |||||||||||||| |||||  || |||| || ||||||  ||||||||    
T  40415034 atcttatatgatatattttgtctttatatattagtagaaaaataagatcaaaacatattatatgaatcataaacatttttaaattagatcatttaa 40414939  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 28389221 - 28389320
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||| ||||||||  ||||||||||  ||| ||||| ||||||||  | ||||||| |||| ||||||||| |||| || ||| || ||||||||||||    
T  28389221 catcttatatgctaacatttgtctttgtatattagta-aaaaatatgattaaaacatgttatatgaatagtacacatttttaaagtaggtcatttaaaat 28389319  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 30080693 - 30080785
Alignment:
Q  138 atgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaatg 230  Q
    |||||| ||||| |||||| ||| ||||||||||||||  |||||  || |||  ||||||||  ||||  |||||||| |||||||||||||    
T  30080693 atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacatactcaaattaggtcatttaaaatg 30080785  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 30681923 - 30682023
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||| ||||| |||||||| |||||  ||| || |||||||||||  ||||   || |||| ||||||||| || | ||||||||| ||||||||||||    
T  30681923 catcttatatgttataatttatctttgtatattattagaaaaatatgatcaaggtatgttatgtgaatagtacacgttttcaaattaggtcatttaaaat 30682022  T
Q  230 g 230  Q
    |    
T  30682023 g 30682023  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 24853362 - 24853254
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    ||||| |||||||||| ||| |||||| ||| || || ||||||| ||||||| |||  ||| ||||||||| |||| || |||||  ||||||||||||    
T  24853362 catcttatatgctatattttctctttatatattaatataaaaataatgtcaaagcatgatatgtgaatagtacacatttttaaattgggtcatttaaaat 24853263  T
Q  230 gcgatgaag 238  Q
    | |||||||    
T  24853262 gggatgaag 24853254  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 41492055 - 41491943
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    |||||||||||||||||||| |||||  |   ||||||||||||||  |||||| || ||||   |||| |||| || || |||||||||||||||||||    
T  41492055 catctcatatgctataatttatctttgtaacttagtagaaaaatatcatcaaaatatgttataaaaataatatatatttttaaattaagtcatttaaaat 41491956  T
Q  230 gcgatgaagagag 242  Q
      || ||||||||    
T  41491955 aggacgaagagag 41491943  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 45001840 - 45001948
Alignment:
Q  136 atatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaatgcgatg 235  Q
    |||||||||| |||||||||| ||| ||| |||||||||  ||||||| || |||| |||||| || |||| || ||| ||  ||||||||||||  |||    
T  45001840 atatgctatattttgtctttatatattagcagaaaaatagagtcaaaatatgttatatgaataatacacattttaaaactagatcatttaaaatggaatg 45001939  T
Q  236 aagagagta 244  Q
    ||| |||||    
T  45001940 aagtgagta 45001948  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 14802921 - 14802972
Alignment:
Q  130 catctcatatgctataatttgtctttacatactagtagaaaaatattgtcaa 181  Q
    ||||| |||||||||| |||||||||| ||| |||||||||||||| |||||    
T  14802921 catcttatatgctatattttgtctttatatattagtagaaaaatatggtcaa 14802972  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 19533972 - 19534070
Alignment:
Q  131 atctcatatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaat 229  Q
    |||| |||||| | |||||||||||  ||| |||||||||||||||||||||  || |||| |||||| |  | || ||||||||| ||||||||||||    
T  19533972 atcttatatgccacaatttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgcatattttcaaattaggtcatttaaaat 19534070  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 23816663 - 23816601
Alignment:
Q  168 aaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaatg 230  Q
    |||||||||||||||| ||||||| |||||| || |||| || ||| || |||||||||||||    
T  23816663 aaaaatattgtcaaaatatattatgtgaataatacacatttttaaagtatgtcatttaaaatg 23816601  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 40711051 - 40711151
Alignment:
Q  130 catctcatatgctataatttgtctttacatac--tagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaa 227  Q
    ||||| ||||| |||| |||||||||| |||   |||||||||||||   ||||||||| |||| ||||| |||  ||| ||||||||| ||||||||||    
T  40711051 catcttatatgttatattttgtctttatatatattagtagaaaaataagatcaaaacatgttatgtgaatcgtacgcattttcaaattatgtcatttaaa 40711150  T
Q  228 a 228  Q
    |    
T  40711151 a 40711151  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 26345364 - 26345472
Alignment:
Q  136 atatgctataatttgtctttacatactagtagaaaaatattgtcaaaacatattatttgaatagtatacatcttcaaattaagtcatttaaaatgcgatg 235  Q
    ||||| |||||||| |||||  ||| ||||||||| |||| ||||||  || || | ||||||||  |||  ||||||||| ||||||||||||| || |    
T  26345364 atatgatataatttatctttgtatattagtagaaatatatggtcaaagtatgttgtgtgaatagtgaacaatttcaaattatgtcatttaaaatgggacg 26345463  T
Q  236 aagagagta 244  Q
     ||||||||    
T  26345464 gagagagta 26345472  T

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