View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19105_low_25 (Length: 250)
Name: NF19105_low_25
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_25 |
 | |
|
| [»] scaffold0628 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 32264707 - 32264478
Alignment:
| Q |
8 |
tgagatgaataataattaatttgaagaactatgaacaatttgcaaacttatttttaattaattgaagataaaattgtgggttgaggtggttgtaaggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264707 |
tgagatgaataataattaatttgaagaactatgaacaatttgcaaacttatttttaattaattgaagataaaattgtgggttgaggtggttgtaaggttg |
32264608 |
T |
|
| Q |
108 |
ccaagcacttaaggtagaaaaagcatataattgcaccatgtgtacgtgtctgacatgtagttctattagtagaagaatttgtatgttttttctttcatat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32264607 |
ccaagcacttaaggtagaaaaagcatataattgcaccatgtgtacgtgtctggcatgtagttctattagtagaagaatttgtatgttttttcttttatac |
32264508 |
T |
|
| Q |
208 |
caattactatatatggtgttgcttattgaa |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
32264507 |
caattactatatgtggtgttgcttattgaa |
32264478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0628 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0628
Description:
Target: scaffold0628; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 6588 - 6516
Alignment:
| Q |
166 |
agttctattagtagaagaatttgtatgttt-tttctttcatatcaattactatatatggtgttgcttattgaa |
237 |
Q |
| |
|
||||||| |||||||| |||||||||| || |||| ||| | |||||||| |||| ||||||||||||||||| |
|
|
| T |
6588 |
agttctaatagtagaaaaatttgtatgattctttccttcgtgtcaattacgatatgtggtgttgcttattgaa |
6516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University