View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_3 (Length: 539)
Name: NF19105_low_3
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 145 - 503
Target Start/End: Complemental strand, 35575614 - 35575256
Alignment:
| Q |
145 |
caagtttctttttgacaaaatttcttgataagtgtaagattaaataatcttatttacgctagaggcaagaaaatatgtctcaaaatttgattgctttgac |
244 |
Q |
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| T |
35575614 |
caagtttctttttgacaaaatttcttgataagtgtaagattaaataatcttatttacgctagaggcaagaaaatatgtctcaaaatttgattgctttgac |
35575515 |
T |
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| Q |
245 |
ggagacaatggacattttttgagcataattatggtttttattgactaaatgcttgagaattctaaatcttgttcccagatttatttacaagatttcaacg |
344 |
Q |
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| T |
35575514 |
ggagacaatggacattttttgagcataattatggtttttattgactaaatgcttgagaattctaaatcttgttcccagatttatttacaagatttcaacg |
35575415 |
T |
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| Q |
345 |
tctaaacgtaccaaaatttaaaagacctgatcaaatgaaaatagtcaaaatacatcccccaacacacaacattatgtacatttcttcccccctaaacaag |
444 |
Q |
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| T |
35575414 |
tctaaacgtaccaaaattcaaaagacctgatcaaatgaaaatagtcaaaatacatcccccaacacacaacataatgtacatttcttcccccctaaacaag |
35575315 |
T |
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| Q |
445 |
tactactcctactactttattaaaaaaaatactctctccgtccatttttataagactag |
503 |
Q |
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| T |
35575314 |
tactactcctactactttattaaaaaaaatactctctccgtccatttttataagactag |
35575256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 35575746 - 35575673
Alignment:
| Q |
11 |
cacagaccaaaaccgtggtaatacgtttctgagcaactttcagaactcagtttcctcttcaacctacctataca |
84 |
Q |
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| T |
35575746 |
cacagaccaaaaccgtgggaataagtttctgagcaactttcagaactcagtttcctcttcaacctacctataca |
35575673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 32107998 - 32108034
Alignment:
| Q |
466 |
aaaaaaaatactctctccgtccatttttataagacta |
502 |
Q |
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||||| |||||||||||||||| |||||||||||||| |
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| T |
32107998 |
aaaaataatactctctccgtccctttttataagacta |
32108034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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