View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_31 (Length: 227)
Name: NF19105_low_31
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45652478 - 45652680
Alignment:
| Q |
1 |
catcagatgcataatcatgcatgcatttcaatgattcatagtctctaaacaaatgaccatatccttatcagaacataaactgtctctaaacacagacacc |
100 |
Q |
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| T |
45652478 |
catcagaggcataatcatgcatgcatttcaatgattcatagtctctaaacaaatgaccatatccttatcagaatataaactgtctctaaacacagacacc |
45652577 |
T |
|
| Q |
101 |
ctagtagtagttgacaacaaaccataacaaccaatttacttcaacactctcctcccccattgcaatatatctgaagtgggcttctaaagcaatacattct |
200 |
Q |
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| T |
45652578 |
ctagtagtagttgacaacaaaccataacaaccaatttacttcaacactctcctcccccattgcaatatatctgaagtgggcctctaaagcaatacattct |
45652677 |
T |
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| Q |
201 |
tgt |
203 |
Q |
| |
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||| |
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| T |
45652678 |
tgt |
45652680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 31523915 - 31523947
Alignment:
| Q |
44 |
tctaaacaaatgaccatatccttatcagaacat |
76 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31523915 |
tctaaacaaatgaccatatccttatcagaacat |
31523947 |
T |
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