View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_32 (Length: 222)
Name: NF19105_low_32
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3451396 - 3451617
Alignment:
| Q |
1 |
ttataaatcctaacctagaatacaaaaatagttctgatatgattaacaagtcttcgtagatacggtaaacctaaatatatgtctaatatatgcaaagttt |
100 |
Q |
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| T |
3451396 |
ttataaatcctaacctagaatacaaaaatagttctgatataattaacaagtcttcctagatacggtaaacctaaatatatatctaatatatgtaaagttt |
3451495 |
T |
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| Q |
101 |
taggttcgaattccaaccaccacaataaaagatacggtaaacctaaatactttgaccattttttatagctattaaagattgcagatgtaagtcccgtgag |
200 |
Q |
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| T |
3451496 |
ggggtttgaatcccaaccaccacaataaaagatacggtaaacttaaatactttgaccattttttatagctattaaagattgcagatgtaagtcatgtgag |
3451595 |
T |
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| Q |
201 |
cataggtaggacaatgcattat |
222 |
Q |
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| T |
3451596 |
catagataggacaatgtattat |
3451617 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 15170128 - 15170090
Alignment:
| Q |
84 |
taatatatgcaaagttttaggttcgaattccaaccacca |
122 |
Q |
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| T |
15170128 |
taatatatgcaaagtcttaggttcgaattccaaccacca |
15170090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 8920520 - 8920566
Alignment:
| Q |
84 |
taatatatgcaaagttttaggttcgaattccaaccaccacaataaaa |
130 |
Q |
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| T |
8920520 |
taatatatgcaaggtttgaggttcgaattccaaacaccacaaaaaaa |
8920566 |
T |
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