View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_33 (Length: 221)
Name: NF19105_low_33
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 36152176 - 36152368
Alignment:
| Q |
11 |
cagcacagataaactctagtttgaagagttcgatctctcaagtctgataatccttctttccatctgcaaattgatcaaagtaatcaaacatattaatata |
110 |
Q |
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| T |
36152176 |
cagcacagataaactctagtttgaagagttcgatctctcaagtctgataatccttcgttccatctgcaaattgatcaaagtaatcaaacatattaatata |
36152275 |
T |
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| Q |
111 |
tcatacatgctttggaaactcaagaattgtttccccttcatgcagttagtatctaagttgcattttaaagagctaaaagagttcatgcagttatg |
205 |
Q |
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| T |
36152276 |
tcat--atgctttggaaactcaagaattgtttccccttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcagctatg |
36152368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 36157113 - 36157288
Alignment:
| Q |
25 |
tctagtttgaagagttcgatctctcaagtctgataatccttctttccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttg |
124 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36157113 |
tctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttg |
36157212 |
T |
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| Q |
125 |
gaaactcaagaattgtttccccttcatgcagttagtatctaagttgcattttaaagagctaaaagagttcatgcag |
200 |
Q |
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| T |
36157213 |
gaaactcaagaattgtttccttttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcag |
36157288 |
T |
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