View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_34 (Length: 217)
Name: NF19105_low_34
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_34 |
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| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 12845651 - 12845770
Alignment:
| Q |
16 |
caagttcaatacctctaatttgggaactagaaagttcatttcaaatagcttagcgccgaaagaggaggctaagcttaaatgtctaatattacaacatctc |
115 |
Q |
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| T |
12845651 |
caagttcaatacctctaatttgggaacttcaaggttcatctcaagtagcttggctccgaaggaggaggctaaactcaaatgtctaatcttatcgcttctc |
12845750 |
T |
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| Q |
116 |
cttaaaacttcagcaacacc |
135 |
Q |
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| T |
12845751 |
cttaaaacttcaccaacacc |
12845770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 32267533 - 32267574
Alignment:
| Q |
16 |
caagttcaatacctctaatttgggaactagaaagttcatttc |
57 |
Q |
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| T |
32267533 |
caagttcaatacctccaatttgggaacttcaaagttcatttc |
32267574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 41889594 - 41889545
Alignment:
| Q |
17 |
aagttcaatacctctaatttgggaactagaaagttcatttcaaatagctt |
66 |
Q |
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| T |
41889594 |
aagttcaacacctccaatttgggaactttaaagttcatttcaagtagctt |
41889545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12846961 - 12847005
Alignment:
| Q |
152 |
tggagagaaactgtttggaaacgagggagaggtgttccaaataac |
196 |
Q |
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| T |
12846961 |
tggagaggaactgcttggaaacgagggagagatgttccaagtaac |
12847005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 7977701 - 7977745
Alignment:
| Q |
81 |
aggctaagcttaaatgtctaatattacaacatctccttaaaactt |
125 |
Q |
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| T |
7977701 |
aggctaggtttaaatgtctaatgttacaacatctccttaaaactt |
7977745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 3438540 - 3438498
Alignment:
| Q |
83 |
gctaagcttaaatgtctaatattacaacatctccttaaaactt |
125 |
Q |
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| T |
3438540 |
gctaagttcaaatgtctaatcttacaacatctccttaaaactt |
3438498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 659832 - 659873
Alignment:
| Q |
81 |
aggctaagcttaaatgtctaatattacaacatctccttaaaa |
122 |
Q |
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| T |
659832 |
aggctaagtttaaatatctaatgttacaacatctccttaaaa |
659873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 7307918 - 7307958
Alignment:
| Q |
16 |
caagttcaatacctctaatttgggaactagaaagttcattt |
56 |
Q |
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| T |
7307918 |
caagttcaatacctccaatttgggaactttaaagttcattt |
7307958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 1440 - 1396
Alignment:
| Q |
81 |
aggctaagcttaaatgtctaatattacaacatctccttaaaactt |
125 |
Q |
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| T |
1440 |
aggctaagttcaaatgtctaatcttataacatctccttaaaactt |
1396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 7555460 - 7555488
Alignment:
| Q |
154 |
gagagaaactgtttggaaacgagggagag |
182 |
Q |
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| T |
7555460 |
gagagaaactgtttggaaacgagggagag |
7555488 |
T |
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