View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_5 (Length: 522)
Name: NF19105_low_5
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Complemental strand, 36400178 - 36399688
Alignment:
| Q |
13 |
attattctaatgtcaattatctttttcttgtcaagttcttactagaccaagaattttatagatatattaattataatgagtgactgaaaaactactccca |
112 |
Q |
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| T |
36400178 |
attattctaatgtcaattatctttttcttgtcaagttcttactagaccaagaattttatagatatattaattataatgagtgactgaaaaactactccca |
36400079 |
T |
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| Q |
113 |
gtgtggaaaacttacacatattcatctctcgagacgttgattcattctgaagccgaaaatcatctttagcctgatactggtgaccactattgctttctct |
212 |
Q |
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| T |
36400078 |
gtgtggaaaacttacacatattcatctctcgagacgttgattcattctgaagccgaaaatcatctttagcctgatactggtgaccactattgctttctct |
36399979 |
T |
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| Q |
213 |
acaaaggttgggtctctgcaacttcaatcttctgaacttgatctgtgtaactttttgaataactaggccttattgtttttactttcaggtgcttcaatct |
312 |
Q |
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| T |
36399978 |
acaaaggttgggtctctgcaacttcaatcttctgaacttgatctgtgtaactttttgaataactaggccttattgtttttactttcaggtgcttcaatct |
36399879 |
T |
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| Q |
313 |
tataaactagcacattgttattcagtttcaatggaagatttttcacaaaactcaaaatggaagtatcatgttttcttgagttttaggggagaagacacgc |
412 |
Q |
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| T |
36399878 |
tataaactagcacattgttattcagtttcaatggaagatttttcacaaaactcaaaatggaagtatcatgttttcttgagttttaggggagaagacacgc |
36399779 |
T |
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| Q |
413 |
gcttaggcttcaccgatcacctatatgcatccttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagt |
503 |
Q |
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| T |
36399778 |
gcttaggcttcaccgatcacctatatgcatccttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagt |
36399688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 500
Target Start/End: Complemental strand, 36393909 - 36393420
Alignment:
| Q |
13 |
attattctaatgtcaattatctttttcttgtcaagttcttactagaccaagaatttta--tagatatattaatt---ataatgagtgactgaaaaactac |
107 |
Q |
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| T |
36393909 |
attattctaatgtcaattatctttttcttgtcaagtttttataagacctaggatttttgttagatatattaattgcaataaggagtgactaaaaaattac |
36393810 |
T |
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| Q |
108 |
tcccagtgtggaaaac-ttacacatattcatctctcgagacgttgattcattctgaagccgaaaatcatctttagcctgatactggtgaccactattgct |
206 |
Q |
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| T |
36393809 |
tcccaatgtggacactgttacacatattcatctctcgagacattgaactactcagaagctgaaaatc---ttttcactgatatcggtgatcactcttgct |
36393713 |
T |
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| Q |
207 |
ttctctacaaaggttgggtctctgcaacttcaatcttctgaacttgatctgtgtaactttttgaataactaggccttattgttttt-actttcaggtgct |
305 |
Q |
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| T |
36393712 |
ttctccgcaaaggttggatttctgcaacttcaatcttttgcatctgatcagtataacttgttgaataaccaggccttattattttttactttcaggtgct |
36393613 |
T |
|
| Q |
306 |
tcaatcttataaactagcacattgttattcagtttcaatggaagatttttcacaaaactcaaaatggaagtatcatgttttcttgagttttaggggagaa |
405 |
Q |
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|| || ||| |||||||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36393612 |
tcgatttta--aactagcacattattgttcagtttcaatggaggattggtcacaaaactcaaaatggaagtatcatgttttcttgagttttagaggagaa |
36393515 |
T |
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| Q |
406 |
gacacgcgcttaggcttcaccgatcacctatatgcatccttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtga |
500 |
Q |
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| T |
36393514 |
gacacgcgctcaggcttctccgatcacctatatgcatccttggtgcgtaagagtataataactttcagagatgatgaagaacttgcaagaggtga |
36393420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 36408980 - 36408815
Alignment:
| Q |
338 |
tttcaatggaagatttttcacaaaactcaaaatggaagtatcatgttttcttgagttttaggggagaagacacgcgcttaggcttcaccgatcacctata |
437 |
Q |
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| T |
36408980 |
tttcaatggaagattgttcacaaaactcaaaatggaagtatcatgttttcttgagttttaggggagaagacacgcgcttaggcttcaccgatcacctata |
36408881 |
T |
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| Q |
438 |
tgcatccttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagt |
503 |
Q |
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| T |
36408880 |
tgcagccttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagt |
36408815 |
T |
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