View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19105_low_6 (Length: 520)

Name: NF19105_low_6
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19105_low_6
NF19105_low_6
[»] chr1 (1 HSPs)
chr1 (31-510)||(36951434-36951912)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 31 - 510
Target Start/End: Complemental strand, 36951912 - 36951434
Alignment:
Q  31 ttcaattgtttgtgatttgagattgaaatgtctggttcattagctgcaggtagaggaggaaatggaagtagtagtgatgtaccagtaccttatcctcaac 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  36951912 ttcagttgtttgtgatttgagattgaaatgtctggttcattagctgcaggtagaggaggaaatggaagtagcagtgatgtaccagtacctgatcctcaac 36951813  T
Q  131 ctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctttcactgggtaacaannnnnnnnattagaattaga 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  36951812 ctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctttcactgggtaacaa-tttttttattagaattaga 36951714  T
Q  231 gcacgtttgtcacaactttcttnnnnnnnnttataatttgaaagaannnnnnnncttctaaaaatgataaaaagttttgagtacctgttctagctagaaa 330  Q
    ||||||||||||||||||||||        ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  36951713 gcacgtttgtcacaactttcttaaaaaaaattataatttgaaagaattttttttcttctaaaaatgataaaaagttttgagtacctgttctagctagaaa 36951614  T
Q  331 attatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttccttttggtaagnnnnnnnnngttgtttattgcatact 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| ||||||    
T  36951613 attatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttccttttggtaagtttttttatgttgtttattacatact 36951514  T
Q  431 agaattagcttaatcatgttaattatttattgattgtagagtttattcaacatggtagatgtatgttgttgtcacctttg 510  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36951513 agaattagcttaatcatgttatttatttattgattgtatagtttattcaacatggtagatgtatgttgttgtcacctttg 36951434  T

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