View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_8 (Length: 469)
Name: NF19105_low_8
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 33298572 - 33298304
Alignment:
| Q |
13 |
aatatcaagcaaataatgtccaacaacatttccnnnnnnngggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacatgtaatcagta |
112 |
Q |
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| T |
33298572 |
aatatcaagcaaataatgtcca-caacatttccaaaaaaagggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacatgtaatcagta |
33298474 |
T |
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| Q |
113 |
actacgtagaatacattacacaatatcatgcattagttaaacaaattccaaggttcaaaaacagcatgccatggttgtaaaaattgtctcatggatcaag |
212 |
Q |
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| T |
33298473 |
actacgtagaatacattacacaatatcatgcattagttaaacaaattccaaggttcaacaacagcatgccatggttgtaaaaatggtctcatggatcaag |
33298374 |
T |
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| Q |
213 |
agacgtgaaagactt-aaactttgaatattaaacaagtttctatagctcctccaacaaaagccaccttaa |
281 |
Q |
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| T |
33298373 |
agacgtgaaagacttaaaactttgaatactaaacaagtttctatacctcctccaacaaaagccaccttaa |
33298304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 33298168 - 33298126
Alignment:
| Q |
410 |
gaaacgttgtgcataccatttgagctggattgaggtggcaaac |
452 |
Q |
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| T |
33298168 |
gaaacgttgtgcataccatttgagctggattgaggtggcaaac |
33298126 |
T |
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