View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19105_low_9 (Length: 458)
Name: NF19105_low_9
Description: NF19105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19105_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 39281797 - 39281365
Alignment:
| Q |
19 |
agaaggagcacatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttnnnnnnnnnn-ttaacacaagaattcgacgccacagctc |
117 |
Q |
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| T |
39281797 |
agaaggagcagatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttaaaaaaaaaaattaacacaagagttcgacgccacagctc |
39281698 |
T |
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| Q |
118 |
ttgcaacgtgcagttatgtatggcaagaatgaaatccttcaaaagtgatgtatctacagtgaaatttccacttaccgctatgtgaagattattgatgatg |
217 |
Q |
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| T |
39281697 |
ttgcaacgtgcagttatgtatggcaaaaacgaaatccttcaaaagtgatgtatctacagcaaaatttccacttaccgctatgtgaagattattgatgatg |
39281598 |
T |
|
| Q |
218 |
gatggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttccca |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39281597 |
gatggtggaaagccaaaaatctgccacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttccca |
39281498 |
T |
|
| Q |
318 |
tgagaatagtaaattgctcagaataagaattac--tatctgacaattcaaatcaatgagaattataaagtgaatctcttatggcaggagttttaaaacac |
415 |
Q |
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| T |
39281497 |
tgagaatagtaaattgctcagaatcagaattactatatcagacaattcaaatcaacgagaattatacagtgaatctcttatggcaggagttttaaaacac |
39281398 |
T |
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| Q |
416 |
caaattggccttttaacgagatgaagctctctg |
448 |
Q |
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| T |
39281397 |
caaattggccttttaacgagatgaagctctctg |
39281365 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 17348529 - 17348648
Alignment:
| Q |
212 |
atgatggatggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaat |
311 |
Q |
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||||||||||||||| ||| |||||| || |||| ||||||||||||||| ||| ||||||||| ||||||||| || | |||||| ||||| || || |
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| T |
17348529 |
atgatggatggtggatagctaaaaattta-cacacaaatatggcaatgcaccctttggatgaaatgtggcggattatggaggctag-taaaagtcctgat |
17348626 |
T |
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| Q |
312 |
ttcccatgagaatagtaaattg |
333 |
Q |
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| T |
17348627 |
ttgccatgagaatagtaaattg |
17348648 |
T |
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