View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_high_12 (Length: 345)

Name: NF19106_high_12
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_high_12
NF19106_high_12
[»] chr6 (10 HSPs)
chr6 (59-334)||(787217-787492)
chr6 (121-285)||(9664639-9664803)
chr6 (114-284)||(3074909-3075082)
chr6 (15-65)||(787539-787589)
chr6 (114-237)||(21146819-21146941)
chr6 (77-138)||(8655790-8655851)
chr6 (60-132)||(24249840-24249910)
chr6 (59-135)||(6825454-6825529)
chr6 (59-117)||(23343941-23343997)
chr6 (59-87)||(8837163-8837191)
[»] chr4 (4 HSPs)
chr4 (113-284)||(55849418-55849590)
chr4 (59-259)||(55851937-55852150)
chr4 (59-132)||(5440946-5441019)
chr4 (286-334)||(33722080-33722128)
[»] chr3 (10 HSPs)
chr3 (59-284)||(20868675-20868901)
chr3 (114-251)||(27462140-27462277)
chr3 (114-284)||(24595209-24595375)
chr3 (59-284)||(51306330-51306554)
chr3 (114-284)||(20871313-20871490)
chr3 (163-284)||(51308791-51308912)
chr3 (59-127)||(52737774-52737842)
chr3 (209-284)||(35610797-35610872)
chr3 (114-168)||(27462290-27462344)
chr3 (59-118)||(4602399-4602458)
[»] chr1 (7 HSPs)
chr1 (138-284)||(20225515-20225661)
chr1 (59-234)||(20226767-20226942)
chr1 (59-135)||(18705653-18705729)
chr1 (218-283)||(20226953-20227018)
chr1 (59-127)||(9908127-9908194)
chr1 (78-135)||(29849953-29850008)
chr1 (59-92)||(35270048-35270081)
[»] chr8 (15 HSPs)
chr8 (81-256)||(35416056-35416231)
chr8 (120-289)||(12062760-12062931)
chr8 (60-204)||(3788446-3788591)
chr8 (120-284)||(369263-369425)
chr8 (114-253)||(31909100-31909236)
chr8 (213-284)||(4676130-4676201)
chr8 (213-284)||(4678075-4678146)
chr8 (59-127)||(4676285-4676354)
chr8 (59-123)||(39327-39391)
chr8 (81-127)||(26174391-26174437)
chr8 (59-127)||(7277695-7277762)
chr8 (140-263)||(3785816-3785937)
chr8 (102-193)||(19472471-19472563)
chr8 (102-193)||(19543396-19543488)
chr8 (102-193)||(19589208-19589300)
[»] chr2 (2 HSPs)
chr2 (114-284)||(26608008-26608177)
chr2 (59-135)||(24038380-24038456)
[»] chr5 (8 HSPs)
chr5 (143-284)||(27172855-27172995)
chr5 (60-127)||(35309093-35309160)
chr5 (59-135)||(41951676-41951752)
chr5 (213-284)||(39040636-39040707)
chr5 (59-127)||(30518630-30518698)
chr5 (59-127)||(30558970-30559038)
chr5 (59-135)||(21254265-21254340)
chr5 (102-135)||(26873149-26873182)
[»] chr7 (4 HSPs)
chr7 (59-135)||(41830317-41830393)
chr7 (59-127)||(34510821-34510888)
chr7 (120-263)||(2577001-2577142)
chr7 (60-127)||(36647433-36647500)
[»] scaffold0001 (1 HSPs)
scaffold0001 (59-138)||(146666-146744)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 59 - 334
Target Start/End: Complemental strand, 787492 - 787217
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttgga 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  787492 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagtttgga 787393  T
Q  159 aaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcct 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  787392 aaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcggtacaaatgagtcaatcatatgacttatatagtaactaaactagtgtcct 787293  T
Q  259 aactacctatatcattattcttaatatttactgtttcaattaatattccactttctaagatgttattgtgtttcat 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787292 aactacctatatcattattcttaatatttactgtttcaattaatattccactttctaagatgttattgtgtttcat 787217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 285
Target Start/End: Original strand, 9664639 - 9664803
Alignment:
Q  121 aaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagt 220  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagt 9664738  T
Q  221 caaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatat 285  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  9664739 caaccatgtgacttatatagtaactaaactagtgtcctaattaactatatcatcattcttaatat 9664803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 284
Target Start/End: Complemental strand, 3075082 - 3074909
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtatt-gatgatacttgaaatgatacaagaatgagaaagatcagtac 212  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||  ||||||   |||    
T  3075082 tgttagaaaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttgaaatgatataagaatggaaaagatagatac 3074983  T
Q  213 aaatgagtcaaccatgtaacttatata--gtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||| ||||||||| | |||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  3074982 aaatgagacaaccatgtgatttatatatagtaactaaactagtgtcctaactaactatatcattattcttaata 3074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 787589 - 787539
Alignment:
Q  15 atcaagaacgtgacactgaatcggaatcagtgaaaaaaggaagggaaaatg 65  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  787589 atcaagaacgtgacactgaatcggaatcagtgaaaaaaggaagagaaaatg 787539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 21146819 - 21146941
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaag-cttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtac 212  Q
    ||||| ||||||||||||||||  | ||||||||||||  ||| ||||| |||||||||||  ||| |||||||||||||||||||| |||||   ||||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttgaaatgatacaagaatga-aaagagaggtac 21146917  T
Q  213 aaatgagtcaaccatgtaacttata 237  Q
    ||||||||||| ||||| |||||||    
T  21146918 aaatgagtcaa-catgtgacttata 21146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 8655790 - 8655851
Alignment:
Q  77 atccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccataga 138  Q
    |||||||||||||| ||||| ||  |||||||||||||||||||||||||| ||||||||||    
T  8655790 atccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccataga 8655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 24249910 - 24249840
Alignment:
Q  60 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatc 132  Q
    |||||||||| ||||||  |||| |||||||||| || ||| |||||||||||||||||||||||||| ||||    
T  24249910 aaaatgcagcagaaaat--ccttaaaggtggatatcagattagctctgataccatgttaggaaacatggcatc 24249840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 6825454 - 6825529
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||| |||||||||||||||||||| |||||||    
T  6825454 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccat 6825529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 23343997 - 23343941
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgtt 117  Q
    |||| |||||||||||||||||||||||||||||||||  ||  |||||||||||||||    
T  23343997 gaaagtgcagcggaaaatatccttcaaggtggataccaggtt--ctctgataccatgtt 23343941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 8837163 - 8837191
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaagg 87  Q
    |||||||||||||||||||||||||||||    
T  8837163 gaaaatgcagcggaaaatatccttcaagg 8837191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 55849418 - 55849590
Alignment:
Q  113 atgttaggaaacatgtcatccatagatatagagagaaaagcttgg-aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagta 211  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  |||    
T  55849418 atgttaggaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaatgatacaagaatggaaaagataggta 55849517  T
Q  212 caaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  55849518 caaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaata 55849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 55851937 - 55852150
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagaga----aaagct 154  Q
    ||||||||||||||||||||| ||| ||||||||||||   |||||||||||| ||||||||||||||| ||||||| ||||||||||||    ||||||    
T  55851937 gaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatggatatagagagagagaaaagct 55852036  T
Q  155 tggaaaa---------ctattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact 245  Q
    |||||||         ||||||||||||||||| |||||||||||||||||||  |||||| | |||||||||||||||||||| | |||||||||||||    
T  55852037 tggaaaaactattgtactattgtattgatgatagttgaaatgatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaact 55852136  T
Q  246 aaactagtgtccta 259  Q
    || |||||||||||    
T  55852137 aatctagtgtccta 55852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 5441019 - 5440946
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatc 132  Q
    |||||||||| ||||||||||||||||  |||||||||  || |||||||||||||||||||||||||| ||||    
T  5441019 gaaaatgcaggggaaaatatccttcaaaatggataccaggttagctctgataccatgttaggaaacatggcatc 5440946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 33722128 - 33722080
Alignment:
Q  286 ttactgtttcaattaatattccactttctaagatgttattgtgtttcat 334  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  33722128 ttactgtttcaattgatattccactttgtaagctgttagtgtgtttcat 33722080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 20868901 - 20868675
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttgga 158  Q
    |||||||||||||||||| |  ||||||||||||||||    ||||||||||||||||| ||||||||| |||||||  | | |||||||||||||| ||    
T  20868901 gaaaatgcagcggaaaat-tgtttcaaggtggataccaatcatgctctgataccatgttgggaaacatggcatccatgaaaagagagagaaaagcttaga 20868803  T
Q  159 aaactattgtattgatgatacttgaa-atgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtc 256  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||||  |||||||| |||||||||||| ||||||||||||||| |||||||| ||    
T  20868802 aaactattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataagtcaaccatgtgacttatatagtaactaaaactagtatc 20868703  T
Q  257 ctaactacctatatcattattcttaata 284  Q
    ||||||| ||||||||||||||||||||    
T  20868702 ctaactaactatatcattattcttaata 20868675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 27462277 - 27462140
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 213  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||  |||||    
T  27462277 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtaca 27462178  T
Q  214 aatgagtcaaccatgtaacttatatagtaactaaacta 251  Q
    |||||||||||||| | |||||||||||||||||||||    
T  27462177 aatgagtcaaccatatgacttatatagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 284
Target Start/End: Complemental strand, 24595375 - 24595209
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 212  Q
    ||||||||||||   |||||||  | |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||||    
T  24595375 tgttaggaaacacaacatccatgaagatagagagaaaagcttagaaa-ctattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtac 24595277  T
Q  213 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  24595276 aaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaa----ctatatcattattcttaata 24595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 51306554 - 51306330
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaa-gcttgg 157  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||  |||||||| |||||||  | |||||||||||| |||| |    
T  51306554 gaaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatgacatccatgaaaatagagagaaaaagcttag 51306455  T
Q  158 aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcc 257  Q
    |||  |||||||||||| ||| || ||||||||||| ||| | | |||| |||| || |||||||||||| ||| |||||||||||||| ||||||||||    
T  51306454 aaat-tattgtattgataatagttaaaatgatacaaaaataaaagagattagtataa-tgagtcaaccatataagttatatagtaactacactagtgtcc 51306357  T
Q  258 taactacctatatcattattcttaata 284  Q
    ||| || ||||||||||||||||||||    
T  51306356 taattaactatatcattattcttaata 51306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 284
Target Start/End: Complemental strand, 20871490 - 20871313
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattg-----atgatacttgaaa-tgatacaagaatgagaaagatc 207  Q
    |||| ||||||||| |||||||  | | |||||||||||||| ||||||||||||||||     |||||| |||||| | |||||||||||| ||||||     
T  20871490 tgttgggaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagata 20871391  T
Q  208 agtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 284  Q
     ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||    
T  20871390 ggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaata 20871313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 51308912 - 51308791
Alignment:
Q  163 tattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaact 262  Q
    |||||||||||| ||| |||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaactacactagcgtcctaatt 51308813  T
Q  263 acctatatcattattcttaata 284  Q
    | ||||||||||||||||||||    
T  51308812 aactatatcattattcttaata 51308791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 52737774 - 52737842
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52737774 gaaaatgcagcggaaaatatccttcaaggtggataccagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 35610872 - 35610797
Alignment:
Q  209 gtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaactaactatattattattcttaata 35610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 27462344 - 27462290
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgt 168  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  27462344 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgt 27462290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 4602458 - 4602399
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgtta 118  Q
    |||||||||||||||||  ||||||||||||||||| |  || |||||||||||||||||    
T  4602458 gaaaatgcagcggaaaaattccttcaaggtggatactaggttagctctgataccatgtta 4602399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 20225515 - 20225661
Alignment:
Q  138 atatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttata 237  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  ||||||| ||||||||||||| |||||||    
T  20225515 atatagagagaaaagcttgcaaaactattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttata 20225614  T
Q  238 tagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20225615 tagtaactaaactagtgtcctaactaactatatcattattcttaata 20225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 20226767 - 20226942
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagag--agaaaagcttg 156  Q
    ||||||||||||||||||  ||||||||| |||||||| ||| |||||||||||||||||||||||| | ||| ||| |||||||||  ||||||| |||    
T  20226767 gaaaatgcagcggaaaat--ccttcaaggaggataccagattagctctgataccatgttaggaaacacggcattcatggatatagagagagaaaagtttg 20226864  T
Q  157 gaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaactt 234  Q
     ||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  20226865 aaaaactattgtattgatgataattgaaatgatacaagaatgaaaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 18705653 - 18705729
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  18705653 gaaaatgcagcggaaaaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccat 18705729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 20226953 - 20227018
Alignment:
Q  218 agtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaat 283  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  20226953 agtcaaccatatgacttatatagtaactaaactagtgtcctagctaactatatcattattcttaat 20227018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 9908127 - 9908194
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    |||| ||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  9908127 gaaagtgcagcggaaaatttc-ttcaaggtggataccagattagctctgataccatgttaggaaacatg 9908194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 29849953 - 29850008
Alignment:
Q  78 tccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||    
T  29849953 tccttcaaggtggataccat--ttgctctgataccatgttatgaaacatggcatccat 29850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 35270048 - 35270081
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggat 92  Q
    ||||||||||||||||||||| ||||||||||||    
T  35270048 gaaaatgcagcggaaaatatcattcaaggtggat 35270081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 81 - 256
Target Start/End: Original strand, 35416056 - 35416231
Alignment:
Q  81 ttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatact 180  Q
    ||||||||||||||||  | |||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||||||||||| ||| || |    
T  35416056 ttcaaggtggataccaattatgctctgataccatgttaagaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagt 35416155  T
Q  181 tgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtc 256  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35416156 tgaaatgatacaataatgaagaagataagtacaaatgagtcaaccatgtgacttatatagtcactaaactagtgtc 35416231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 12062931 - 12062760
Alignment:
Q  120 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtacaaatga 218  Q
    |||||||| |||||||  | |||||||||||||||| |||||||||| | ||||||||  |||||| | |||||||||||| | |  |  ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  219 gtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaatatttac 289  Q
    ||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||    
T  12062831 gtcaaccatgtgacttatatagtaactaaaactagtatcttaactaactatatcattattcttaatagttac 12062760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 3788446 - 3788591
Alignment:
Q  60 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaa-aagcttgga 158  Q
    |||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||  |||||||| |||||||  | |||||||||| ||| || ||    
T  3788446 aaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatggcatccatgaaaatagagagaagaagtttaga 3788545  T
Q  159 aaactattgtattgatgatacttgaaatgatacaagaatgagaaag 204  Q
    ||| |||||||||||| ||| |||||||||||||||||||| ||||    
T  3788546 aaattattgtattgataatagttgaaatgatacaagaatgaaaaag 3788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 284
Target Start/End: Complemental strand, 369425 - 369263
Alignment:
Q  120 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgag 219  Q
    |||||||| |||||||  | ||| |||||||| |||  | ||||||||||||||||||| |||||| ||||||| ||| | | ||||| |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaactt--acaactattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattag 369328  T
Q  220 tcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
     ||||||| | |||||| |||||||||||||| | | ||||||| |||||| |||||||||||||    
T  369327 ccaaccatatgacttatttagtaactaaactactattctaactaactatattattattcttaata 369263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 31909100 - 31909236
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 213  Q
    |||||||||||||| |||||||  | ||||||||||||||||  ||| ||||||||||||||||| |||||| ||||||| ||||| | |||   |||||    
T  31909100 tgttaggaaacatg-catccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtaca 31909197  T
Q  214 aatgagtcaaccatgtaacttatatagtaactaaactagt 253  Q
    |||||||||| | ||| ||||||||||| |||||||||||    
T  31909198 aatgagtcaa-cttgtgacttatatagtgactaaactagt 31909236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 4676201 - 4676130
Alignment:
Q  213 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4676130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 4678146 - 4678075
Alignment:
Q  213 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 4676354 - 4676285
Alignment:
Q  59 gaaaatgcagcggaaaa-tatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||| |||||||||||||||||||||  || ||||||||||||| ||||||||||||    
T  4676354 gaaaatgcagcggaaaaatatccttcaaggtggataccaggttagctctgataccatattaggaaacatg 4676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 39391 - 39327
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaa 123  Q
    ||||||||||||||||||||||||||||||||||| |  ||| ||||||||| ||||||| ||||    
T  39391 gaaaatgcagcggaaaatatccttcaaggtggatatcggattagctctgatatcatgttaagaaa 39327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 26174437 - 26174391
Alignment:
Q  81 ttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||    
T  26174437 ttcaaggtggataccatatttgttctgataccatgttagtaaacatg 26174391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 7277695 - 7277762
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||||||||||||    
T  7277695 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctgataccatgttaggaaacatg 7277762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 3785816 - 3785937
Alignment:
Q  140 atagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatat 238  Q
    |||||||||| |||||| | ||| |||||||||||| ||| |||||||||||||||||| | |||| | | |||||||||||||| | ||| ||||||||    
T  3785816 atagagagaagaagcttaggaaattattgtattgataatagttgaaatgatacaagaataaaaaag-tga-tacaaatgagtcaa-cttgtgacttatat 3785912  T
Q  239 agtaactaaactagtgtcctaacta 263  Q
    ||| |||| | ||||  ||||||||    
T  3785913 agtgactatagtagtaccctaacta 3785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 19472471 - 19472563
Alignment:
Q  102 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 193  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19472471 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 19543396 - 19543488
Alignment:
Q  102 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 193  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19543396 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 19589300 - 19589208
Alignment:
Q  102 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 193  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19589300 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19589208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 26608008 - 26608177
Alignment:
Q  114 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 212  Q
    ||||| |||||||| |||||||  | |||||||||||||||| ||||  |||||||||||||||| |||||| |||||||||||||| ||||||  ||||    
T  26608008 tgttaagaaacatgacatccatgaaaatagagagaaaagcttagaaa--tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtac 26608105  T
Q  213 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    | ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  26608106 agatgagtcaaccttgtgacttatatagtaactgaactagtatcctaactaactatatcattattcttaata 26608177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 24038456 - 24038380
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||| |||||||    
T  24038456 gaaaatgcagcggaaaatatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccat 24038380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 27172855 - 27172995
Alignment:
Q  143 gagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagta 242  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||   ||||||||||||| | |  | ||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaa-tgacttatatagta 27172953  T
Q  243 actaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  27172954 actaaactagtatcctaacttactatatcattattcttaata 27172995  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 35309093 - 35309160
Alignment:
Q  60 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  35309093 aaaatgcagcggaaaatatccttcaaggtggataccagattagctctgataccatgttaggaaacatg 35309160  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 41951676 - 41951752
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||| |||||||    
T  41951676 gaaaatgcagcggaaaatatccttcaaggcggataccagattagctctaataccatgttaggaaacatggcatccat 41951752  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 39040636 - 39040707
Alignment:
Q  213 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 284  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 39040707  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 30518630 - 30518698
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||  |||||||    
T  30518630 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatg 30518698  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 30558970 - 30559038
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||  |||||||    
T  30558970 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatg 30559038  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 21254340 - 21254265
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||| |||||||||||||||||||||| |||||||    
T  21254340 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccat 21254265  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 26873149 - 26873182
Alignment:
Q  102 gctctgataccatgttaggaaacatgtcatccat 135  Q
    |||||||||||||||||||||||||| |||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccat 26873182  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 41830393 - 41830317
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 135  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  41830393 gaaaatgcagcggaaaatatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccat 41830317  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 34510888 - 34510821
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34510888 gaaaatgcagcggaaaat-tccttcaaggtggataccagattagctctgataccatgttaggaaacatg 34510821  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 2577142 - 2577001
Alignment:
Q  120 gaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatga 218  Q
    |||||||| |||||||  | |||||||||| |||||| ||||| |||||||||||| ||| |||||||||||||||||||| |||| | | |||||||||    
T  2577142 gaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaag-tga-tacaaatga 2577045  T
Q  219 gtcaaccatgtaacttatatagtaactaaactagtgtcctaacta 263  Q
    ||||| | ||| ||||||||||| |||| ||||||  ||||||||    
T  2577044 gtcaa-cttgtgacttatatagtgactatactagtaccctaacta 2577001  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 36647433 - 36647500
Alignment:
Q  60 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 127  Q
    ||||||||||||||||||||||||||| || |||||| ||| ||||||||||||| |||| |||||||    
T  36647433 aaaatgcagcggaaaatatccttcaagatgaataccagattagctctgataccatattagaaaacatg 36647500  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 146666 - 146744
Alignment:
Q  59 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccataga 138  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||| |||||||||||||||||||||| |||| |||||    
T  146666 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctttgataccatgttaggaaacatggcatctataga 146744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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