View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_high_14 (Length: 312)
Name: NF19106_high_14
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 1194370 - 1194652
Alignment:
| Q |
26 |
ataagaattcctggaacagaaaagctaaatagaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacac |
125 |
Q |
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| T |
1194370 |
ataagaattcctggaatagaaaagctaaatagaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacac |
1194469 |
T |
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| Q |
126 |
aagctcattcgaaagatcatcaaactaaccaactagtttgtttttactttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaat |
225 |
Q |
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| T |
1194470 |
aagctcattcgaaagatcatcaaactaaccaactagtttgtttctactttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaat |
1194569 |
T |
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| Q |
226 |
gcactggtcagggtaaattttgatgatccctcttttgctaaaccaggatcaagtaacacaaattacccaagttcatctcactc |
308 |
Q |
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| T |
1194570 |
gcactagtcagggtaaattttgatgatccctcttttgctaaaccaggatcaaataacacaaattacccaagttcttcacactc |
1194652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 1183732 - 1183896
Alignment:
| Q |
142 |
tcatcaaactaaccaactagtttgtttttactttgatgtcaaagtatatgcgtgta--gacaaatacattcaaaaagttttccaatgcactggtcagggt |
239 |
Q |
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| T |
1183732 |
tcatcaaactaaccagctagtttgtttttactttgatgtcaaagtagattcttgttttggca----cattcaaaaagttttccaatgcattagtcaggtt |
1183827 |
T |
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| Q |
240 |
aaattttgatgatccctcttttgctaaaccaggatcaagtaacacaaattacccaagttcatctcactc |
308 |
Q |
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| T |
1183828 |
aaattttcatgatccctcttttgctaaaccaagatcaagtaacatagattacccaagttcttcacactc |
1183896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 1188836 - 1188907
Alignment:
| Q |
56 |
agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaa |
127 |
Q |
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| T |
1188836 |
agaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaa |
1188907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 898147 - 898207
Alignment:
| Q |
205 |
acattcaaaaagttttccaatgcactggtcagggtaaattttgatgatccctcttttgcta |
265 |
Q |
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| T |
898147 |
acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta |
898207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 1183690 - 1183733
Alignment:
| Q |
54 |
atagaatggaataccacaaactattgatattacaaactaaggtc |
97 |
Q |
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| T |
1183690 |
atagaaaggaaaaccacaaactattgatattacaaactaaggtc |
1183733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 5510434 - 5510378
Alignment:
| Q |
128 |
gctcattcgaaagatcatcaaactaaccaactagtttgtttttactttgatgtcaaa |
184 |
Q |
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| T |
5510434 |
gctcatttgaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaa |
5510378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 5457081 - 5457146
Alignment:
| Q |
64 |
ataccacaaactattgatattacaaactaaggtccaagat-ttctagctattgttctaaacacaag |
128 |
Q |
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| T |
5457081 |
ataccaaaaagtactgatatgacatactaaggtccaagatcttctagctattgttcaaaacacaag |
5457146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 5510535 - 5510462
Alignment:
| Q |
56 |
agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagc |
129 |
Q |
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| T |
5510535 |
agaaaggaaaaccacaatttagtgatattacaaaccaaggtccaggatttctagatattattcaaaacacaagc |
5510462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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