View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_high_15 (Length: 312)
Name: NF19106_high_15
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 48701047 - 48701349
Alignment:
| Q |
1 |
taattggagaggtaaatggagtcttcaggacattgaaaggagctggtccatcccctggagttggacacaggtttaaaaagcttcaaaaccttgaagggat |
100 |
Q |
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| T |
48701047 |
taattggagaggtaaatggagtcttcaggacattgaaaggagctggtccatcccctggagttggacacaggtttaaaaagcttcaaaaccttgaagggat |
48701146 |
T |
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| Q |
101 |
gaagcattctggtccaagctctggtggtgttggccacaaactcaacacagttcaagttcttggagagattaagcattctggtcctagtccaggggaaggg |
200 |
Q |
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| T |
48701147 |
gaagcattctggtccaagctctggtggtgttggccacaaactcgacacagttcaagttcttggagagattaagcattctggtcctagtccaggggaaggg |
48701246 |
T |
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| Q |
201 |
cacaagtaagaatagatagatcatatggaattgattagacacaaataaatatatagccctaaagtacttgttagctattgctactattactcagtgatga |
300 |
Q |
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| T |
48701247 |
cacaagtaagaatagatagatcatatggaattgtttagacacaaataaatatatagccctaaagtacttgttagctattgctactattactcagtgatga |
48701346 |
T |
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| Q |
301 |
tgt |
303 |
Q |
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||| |
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| T |
48701347 |
tgt |
48701349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 48697762 - 48697879
Alignment:
| Q |
1 |
taattggagaggtaaatggagtcttcaggacattgaaaggagctggtccatcccctggagttggacacaggtttaaaaagcttcaaaaccttgaagggat |
100 |
Q |
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| T |
48697762 |
taattggagaggtaaatggagtcttcaggacattgaaaggagctggtccatcccctggaattggacacaggcttaaaaagcttcaaattattggagggat |
48697861 |
T |
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| Q |
101 |
gaagcattctggtccaag |
118 |
Q |
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|||| ||||||||||||| |
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| T |
48697862 |
gaaggattctggtccaag |
48697879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 48693763 - 48693881
Alignment:
| Q |
15 |
aatggagtcttcaggacattgaaaggagctggtccatcccctggagttggacacaggtttaaaaagcttcaaaaccttgaagggatgaagcattctggtc |
114 |
Q |
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| T |
48693763 |
aatggagttttcaggacattgaaaggagctggtccatctcctgggattggacacaggcttaaaaagcttcaaaatcttgaagggatgaaggattctggtc |
48693862 |
T |
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| Q |
115 |
caagctctggtggtgttgg |
133 |
Q |
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|||| |||||||||||||| |
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| T |
48693863 |
caagttctggtggtgttgg |
48693881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 48693907 - 48693983
Alignment:
| Q |
132 |
ggccacaaactcaacacagttcaagttcttggagagattaagcattctggtcctagtccaggggaagggcacaagta |
208 |
Q |
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| T |
48693907 |
ggccaaaaattcaacacagttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagta |
48693983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 48697926 - 48698002
Alignment:
| Q |
132 |
ggccacaaactcaacacagttcaagttcttggagagattaagcattctggtcctagtccaggggaagggcacaagta |
208 |
Q |
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| T |
48697926 |
ggccaaaaattcaacacagttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagta |
48698002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 48680918 - 48681007
Alignment:
| Q |
1 |
taattggagaggtaaatggagtcttcaggacattgaaaggag---ctggtccatcccctggagttggacacaggtttaaaaagcttcaaa |
87 |
Q |
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| T |
48680918 |
taattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaacttaaaaagcttcaaa |
48681007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48687478 - 48687565
Alignment:
| Q |
1 |
taattggagaggtaaatggagtcttcaggacattgaaaggagctggtccatcccctggagttggacacaggtttaaaaagcttcaaaa |
88 |
Q |
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|||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||| | | ||||| |||||||| |
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| T |
48687478 |
taattggagaggtaaatggagttttcaggacattaaaagatgctggtccatcccctggtgttggacacaagctcaaaaaccttcaaaa |
48687565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 48687584 - 48687658
Alignment:
| Q |
134 |
ccacaaactcaacacagttcaagttcttggagagattaagcattctggtcctagtccaggggaagggcacaagta |
208 |
Q |
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| T |
48687584 |
ccacaagcttaacacagttcaaggtcttggtgtgattaagcattctggtcctagtcctggtgaagggcacaagta |
48687658 |
T |
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