View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_high_19 (Length: 265)

Name: NF19106_high_19
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_high_19
NF19106_high_19
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-248)||(822-1069)
[»] scaffold0154 (2 HSPs)
scaffold0154 (1-248)||(14267-14514)
scaffold0154 (1-248)||(23687-23934)


Alignment Details
Target: scaffold0189 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1069 - 822
Alignment:
Q  1 ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1069 ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagcaaaatttgga 970  T
Q  101 atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  969 atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtcgcactagaaacccaatcattgaaatcaaagtgatttcttggt 870  T
Q  201 gatgattcattaacattcttcacttcttcaacaaaaggatgattcaaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  869 gatgattcattaacattcttcacttcttcaacaaaaggatgattcaaa 822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 14267 - 14514
Alignment:
Q  1 ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga 100  Q
    |||| ||||||||||||||||||||| ||  |||| |||||| | ||| || ||||||||||||||||| |||||| ||| |||||||  ||||||| ||    
T  14267 ttcacctaacactaatccaactatctgatctcgaccaactcatcggcccttgatcagtcacaagctgccggagccgatccaccgcggaacaaaatttaga 14366  T
Q  101 atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggt 200  Q
    ||||||||||||| || |||| |||||||||||||||||| | ||||| |||||| |  ||   |||||||||||||||||||||||||||||||||||     
T  14367 atcaaaatcccattgatttgagtcttccgattccggtgaacttggaactgaatcactagcatcggaaacccaatcattgaaatcaaagtgatttcttggc 14466  T
Q  201 gatgattcattaacattcttcacttcttcaacaaaaggatgattcaaa 248  Q
    || ||||||||||||||  |||||||||||||||||||||||||||||    
T  14467 gacgattcattaacattaatcacttcttcaacaaaaggatgattcaaa 14514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 23687 - 23934
Alignment:
Q  1 ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga 100  Q
    |||| ||||||||||||||||||||| |||||||| |||||||| ||  |||| | |||| ||||| || |||||||||| |||| ||   ||   | ||    
T  23687 ttcacctaacactaatccaactatctgattccgaccaactcaccggcttttcaaccgtcagaagcttcccgagccggtccaccgcagaatcaatactaga 23786  T
Q  101 atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggt 200  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  23787 atcaacatcccatggacttaactcttccaattccggtgaattcggagcagaatcattcacactagaaacccaatcattgaaatcaaagtgatttcttggt 23886  T
Q  201 gatgattcattaacattcttcacttcttcaacaaaaggatgattcaaa 248  Q
    || || |||| |||||||||||||||||||||||||||||||||||||    
T  23887 gacgactcatcaacattcttcacttcttcaacaaaaggatgattcaaa 23934  T

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