View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_high_2 (Length: 658)
Name: NF19106_high_2
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 41707078 - 41706428
Alignment:
| Q |
1 |
cccaactccctaggcatggctcaaagtgagttaagagaatttaactcatcatcttggaatttcattccataccttggattgtgtacctggttcattccac |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41707078 |
cccaactccctaggcatggctcaaactgagttaagagaatttaactcatcatcttggaatttcattccataccttggattgtgtacctggttcattccac |
41706979 |
T |
|
| Q |
101 |
acaactgaaaaatattggggctagattttctcatgtcatcatcttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706978 |
acaactgaaaaatattggggctagattttctcatgtcatcatcttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgt |
41706879 |
T |
|
| Q |
201 |
aagattattataattaattaacnnnnnnntatacatgcatataaatacatagttac-gtcatccaccactcaagagcacacgagtggatgaaccatgcat |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
41706878 |
aagattattataattaattaacaaaaaaatatacatgcatataaatacatagttacagtcattcaccactcaagagcacacgagtgtatgaaccatgcat |
41706779 |
T |
|
| Q |
300 |
aagcaattttatt-ctcacagaagnnnnnnnngacccgacccgtgtctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtata |
398 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706778 |
aagcaattttatttctcacagaagaaaaataagacccgacccgtgtctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtata |
41706679 |
T |
|
| Q |
399 |
tacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706678 |
tacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaa |
41706579 |
T |
|
| Q |
499 |
cccttgctgttgataattcccaagtactcctccgggcccaccgctcatttcagcttcatctccaccgttcatcaacatcaaacaccccactctctctttc |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41706578 |
cccttgctgttgataattcccaagtactcctccgggcccaccgctcatttcagcttcatctccaccgttcataaacatcaaacaccccactctctctttc |
41706479 |
T |
|
| Q |
599 |
ctcctcactccatctccaccgtccataaattcgtaaaaataattcttccta |
649 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706478 |
ctcctcactccatctccaccgtccataaattcgtaaaaataattcttccta |
41706428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 425 - 649
Target Start/End: Original strand, 3743253 - 3743477
Alignment:
| Q |
425 |
ctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagta |
524 |
Q |
| |
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|||||||||||| ||||||||| | || | || || |||||||||| || || |||||||| | || |||||||||||||||||||||||||| || |
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| T |
3743253 |
ctatcccaaagcaacgcgcactctttcttcgcgaaccccacgcgctctttctccagatcataaaccacctcaaacccttgctgttgataattccctagag |
3743352 |
T |
|
| Q |
525 |
ctcctccgggcccaccgctcatttcagcttcatctccaccgttcatcaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccat |
624 |
Q |
| |
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|||| || ||||| || |||| ||||||| |||||||||||||||||| |||||||||| || ||||||| || | ||||| ||||||||||| |
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| T |
3743353 |
tagctccaggtccaccatccaactcagtttcatcttcaccgttcatcaacatcatacaccccactttccctttccttctaataccatcgccaccgtccat |
3743452 |
T |
|
| Q |
625 |
aaattcgtaaaaataattcttccta |
649 |
Q |
| |
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||| || || ||||||||||||||| |
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|
| T |
3743453 |
aaactcatagaaataattcttccta |
3743477 |
T |
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