View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_high_20 (Length: 256)

Name: NF19106_high_20
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_high_20
NF19106_high_20
[»] chr3 (15 HSPs)
chr3 (16-239)||(8567928-8568151)
chr3 (35-152)||(6837947-6838064)
chr3 (35-239)||(8472409-8472613)
chr3 (23-239)||(7750932-7751148)
chr3 (38-141)||(5281535-5281638)
chr3 (23-100)||(6479065-6479142)
chr3 (19-100)||(6736855-6736936)
chr3 (86-167)||(13269646-13269727)
chr3 (23-99)||(6519246-6519322)
chr3 (48-100)||(6553521-6553573)
chr3 (86-197)||(6143213-6143324)
chr3 (26-149)||(6917956-6918079)
chr3 (19-69)||(6721102-6721152)
chr3 (19-52)||(6849946-6849979)
chr3 (23-100)||(8455523-8455600)
[»] chr7 (1 HSPs)
chr7 (35-239)||(6572272-6572476)
[»] scaffold0425 (1 HSPs)
scaffold0425 (48-100)||(6560-6612)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 8568151 - 8567928
Alignment:
Q  16 aatatccaatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568151 aatatccaatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatcc 8568052  T
Q  116 aacaattgatttatagaattaagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568051 aacaattgatttatagaattaagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtca 8567952  T
Q  216 cttgaaagacagatgaaagaaatg 239  Q
    ||||||||||||| ||||||||||    
T  8567951 cttgaaagacagacgaaagaaatg 8567928  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 6838064 - 6837947
Alignment:
Q  35 acttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaattgatttatagaat 134  Q
    ||||||||||||||||||||||| |||| || ||| |||||||||| |  ||||||||||| |||||| |||||||||| |||||||||||  |||||||    
T  6838064 acttcatatacctcatgttttagattatcaaaccacttcttcacattttggttttggtacttctttgtctctgcatcattcaacaattgatcgatagaat 6837965  T
Q  135 taagtgtgatttcaagtt 152  Q
    | ||||||| ||||||||    
T  6837964 tcagtgtgacttcaagtt 6837947  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 8472409 - 8472613
Alignment:
Q  35 acttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaattgatttatagaat 134  Q
    |||||||||||||||||||||||   || |||||| ||||| |||| |  ||| ||||||| |||||| ||||||||||||||||||||||| |||||||    
T  8472409 acttcatatacctcatgttttagacgatcaagccaattcttaacattttggttctggtacttctttgtctctgcatcatccaacaattgattgatagaat 8472508  T
Q  135 taagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaag 234  Q
    | | ||||||||| |||| ||  ||||||  ||||    ||  | || ||||||||||||| || |  ||||||| ||| ||||||||||  ||||||||    
T  8472509 tcaatgtgatttcgagttttttaaccaactttttattgcagaggtctttgaaatctcttgaggcaatgctctgaagagtgacttgaaagaatgatgaaag 8472608  T
Q  235 aaatg 239  Q
    |||||    
T  8472609 aaatg 8472613  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 7750932 - 7751148
Alignment:
Q  23 aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaatt 122  Q
    ||||||||||| | ||| ||||| |||||||| || | || |||||| |||||||| | |  || |||||||| |||| | |||||||||||||  | ||    
T  7750932 aatagttgctctaattcgtatacatcatgtttgagatcatcaagccaattcttcacgtttcggtgttggtactcctttatatctgcatcatccagtactt 7751031  T
Q  123 gatttatagaattaagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtcacttgaaa 222  Q
     ||| |||||||  |||||||||||||||| || |  || || || | | ||| || |||||||||||   |||||||||||||    | ||||||||||    
T  7751032 cattgatagaatctagtgtgatttcaagttttttccacagcctttcatggaagtagtctctgaaatcttgagaagccaacctctctcgaatcacttgaaa 7751131  T
Q  223 gacagatgaaagaaatg 239  Q
    |||||| ||||||||||    
T  7751132 gacagacgaaagaaatg 7751148  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 5281535 - 5281638
Alignment:
Q  38 tcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaattgatttatagaattaa 137  Q
    ||||||||  ||||||| || | || |||||| ||||| ||||||||| ||| ||||||| ||  |||||| || |||| || |||||||||||||||||    
T  5281535 tcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttttgtactgcatttgttctgcttcttccagcacttgatttatagaattaa 5281634  T
Q  138 gtgt 141  Q
    ||||    
T  5281635 gtgt 5281638  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 6479142 - 6479065
Alignment:
Q  23 aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 100  Q
    |||||||| ||  ||||||| ||  ||||||| ||||||| |||||| |||||||||||| || ||||||||||||||    
T  6479142 aatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgcttt 6479065  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 6736855 - 6736936
Alignment:
Q  19 atccaatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 100  Q
    |||||||||||| ||  ||||||| |   ||||||| |||| || |||||| |||||||||||| |||||||||||||||||    
T  6736855 atccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6736936  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 13269727 - 13269646
Alignment:
Q  86 ttttggtactgctttgtttctgcatcatccaacaattgatttatagaattaagtgtgatttcaagttcttccaccaaccctt 167  Q
    |||||||||||||| || ||||| ||||||| ||| | ||| ||||| || |||||||||||||||| || ||||| |||||    
T  13269727 ttttggtactgcttagtctctgcgtcatccagcaaataattgatagacttcagtgtgatttcaagttttttcaccagccctt 13269646  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 6519322 - 6519246
Alignment:
Q  23 aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctt 99  Q
    |||||||| ||  ||||||| ||  ||||||| |||| || |||||| |||||||||||| ||||||||||||||||    
T  6519322 aatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctt 6519246  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 6553573 - 6553521
Alignment:
Q  48 catgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 100  Q
    ||||||| |||| || |||||| |||||||||||| |||||||||||||||||    
T  6553573 catgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6553521  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 6143213 - 6143324
Alignment:
Q  86 ttttggtactgctttgtttctgcatcatccaacaattgatttatagaattaagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctga 185  Q
    ||||||||||||||||| ||||  ||||||| ||  | ||| ||||| || |||||||||||||||| || ||||| ||||| | | ||  || ||||||    
T  6143213 ttttggtactgctttgtctctgtgtcatccagcacataattgatagacttgagtgtgatttcaagttttttcaccagcccttcatggaaatagtctctga 6143312  T
Q  186 aatctcttgaag 197  Q
    ||||| ||||||    
T  6143313 aatctgttgaag 6143324  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 6917956 - 6918079
Alignment:
Q  26 agttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaattgat 125  Q
    ||||| || |||||||||||||| ||||| || | || |||||| |||||||| | |  ||||||||||||||||   ||||||||||| | || || ||    
T  6917956 agttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggtactgctttacctctgcatcatcaagcacttcat 6918055  T
Q  126 ttatagaattaagtgtgatttcaa 149  Q
    | |||||||  | |||||||||||    
T  6918056 tgatagaatccaatgtgatttcaa 6918079  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6721152 - 6721102
Alignment:
Q  19 atccaatagttgctcaacttcatatacctcatgttttagtttatgaagcca 69  Q
    ||||||||||||||| ||||| |||||||||||||| || |||| ||||||    
T  6721152 atccaatagttgctctacttcgtatacctcatgtttgagattatcaagcca 6721102  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 6849979 - 6849946
Alignment:
Q  19 atccaatagttgctcaacttcatatacctcatgt 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  6849979 atccaatagttgctcaacttcgtatacctcatgt 6849946  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 8455523 - 8455600
Alignment:
Q  23 aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 100  Q
    |||||||| ||  ||||||| ||  ||||||| || | || |||||| |||||||||||| |||||||||||||||||    
T  8455523 aatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttt 8455600  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 6572476 - 6572272
Alignment:
Q  35 acttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgcatcatccaacaattgatttatagaat 134  Q
    |||||||||||||||||||||||   || ||||||  ||||||| | || |||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  6572476 acttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtctctgcatcatccaacaattgattgatagaat 6572377  T
Q  135 taagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaag 234  Q
    | | |||||||||||||| ||| ||||||||||||   |||    || ||||||||||||| || ||||||| || ||| ||||||||||  || |||||    
T  6572376 tcattgtgatttcaagtttttcaaccaaccctttattgaagagatctttgaaatctcttgaggcaaacctctcaagagtgacttgaaagaacgacgaaag 6572277  T
Q  235 aaatg 239  Q
    |||||    
T  6572276 aaatg 6572272  T

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Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 6612 - 6560
Alignment:
Q  48 catgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 100  Q
    ||||||| |||| || |||||| |||||||||||| |||||||||||||||||    
T  6612 catgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6560  T

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